# ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

## Documentation for package ‘ASpediaFI’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

analyzeFI | Functional interaction analysis of AS events
annotateASevents | AS event annotation
as.table | ASpediaFI accessors
as.table-method | ASpediaFI accessors
as.table<- | ASpediaFI accessors
as.table<--method | ASpediaFI accessors
ASpediaFI | ASpediaFI class
ASpediaFI-accessor | ASpediaFI accessors
ASpediaFI-class | ASpediaFI class
events | ASpediaFI accessors
events-method | ASpediaFI accessors
events<- | ASpediaFI accessors
events<--method | ASpediaFI accessors
exportNetwork | Export network to GML format
gene.table | ASpediaFI accessors
gene.table-method | ASpediaFI accessors
gene.table<- | ASpediaFI accessors
gene.table<--method | ASpediaFI accessors
GSE114922.fpkm | Example gene expression dataset
GSE114922.psi | Example dataset containing PSI values
gtf | ASpediaFI accessors
gtf-method | ASpediaFI accessors
gtf<- | ASpediaFI accessors
gtf<--method | ASpediaFI accessors
network | ASpediaFI accessors
network-method | ASpediaFI accessors
network<- | ASpediaFI accessors
network<--method | ASpediaFI accessors
pathway.table | ASpediaFI accessors
pathway.table-method | ASpediaFI accessors
pathway.table<- | ASpediaFI accessors
pathway.table<--method | ASpediaFI accessors
psi | ASpediaFI accessors
psi-method | ASpediaFI accessors
psi<- | ASpediaFI accessors
psi<--method | ASpediaFI accessors
quantifyPSI | AS event quantification
samples | ASpediaFI accessors
samples-method | ASpediaFI accessors
samples<- | ASpediaFI accessors
samples<--method | ASpediaFI accessors
visualize | AS event and pathway visualization