HyperGTestGeneEnrichment {AMARETTO} | R Documentation

## Hyper Geometric Geneset Enrichement Test

### Description

Calculates the p-values for unranked gene set enrichment based on two gmt files as input and the hyper geometric test.

### Usage

    HyperGTestGeneEnrichment(gmtfile, testgmtfile, NrCores,
      ref.numb.genes = 45956)

### Arguments

`gmtfile` | The gmt file with reference gene set.
`testgmtfile` | The gmt file with gene sets to test. In our case, the gmt file of the modules.
`NrCores` | Number of cores used for parallelization.
`ref.numb.genes` | The total number of genes teste, standard equal to 45 956 (MSIGDB standard).

### Value

result

[Package AMARETTO version 1.2.0 Index]