AMARETTO_VisualizeModule {AMARETTO} | R Documentation

## AMARETTO_VisualizeModule

### Description

Function to visualize the gene modules

### Usage

    AMARETTO_VisualizeModule(AMARETTOinit, AMARETTOresults, ProcessedData,
      ModuleNr, show_row_names = FALSE, SAMPLE_annotation = NULL,
      ID = NULL, order_samples = NULL)

### Arguments

`AMARETTOinit` | List output from AMARETTO_Initialize().
`AMARETTOresults` | List output from AMARETTO_Run().
`ProcessedData` | List of processed input data
`ModuleNr` | Module number to visualize
`show_row_names` | If TRUE, row names will be shown on the plot.
`SAMPLE_annotation` | Matrix or Dataframe with sample annotation
`ID` | Column used as sample name
`order_samples` | Order samples in heatmap by mean or by clustering

### Value

result

### Examples

    data('ProcessedDataLIHC')
    AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
                                        NrModules = 2, VarPercentage = 50)

    AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

    AMARETTO_VisualizeModule(AMARETTOinit = AMARETTOinit,AMARETTOresults = AMARETTOresults,
                             ProcessedData = ProcessedDataLIHC, ModuleNr = 1)

[Package AMARETTO version 1.2.0 Index]