fa42b53efdd66b55a2cf68a8790a4abe *DESCRIPTION
4d34e9192892ea2c33815f7fbd1b6de9 *INDEX
6fee5407006cdbf611eab3e3df7acb97 *LICENSE
19fd6ab0cb3d9ea41ead7edc0fd471c3 *Meta/Rd.rds
a4081712be3649fee57cb72b810cc0f9 *Meta/features.rds
947a1ee0d70bb46a7d67bd22808662ee *Meta/hsearch.rds
fdb05385bd53291daae799fd0dcf64cb *Meta/links.rds
657bdd4681cf2284ace3d51e9e881614 *Meta/nsInfo.rds
76d8a006d046a2b83a4d336c310b9480 *Meta/package.rds
9506236848b3bda2875891157f4ecb1a *Meta/vignette.rds
ccb34bc49be65dade7bf567ea32337c8 *NAMESPACE
96bef70c515134fa6b6b61bc3261aec2 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ALPS
f5c48bb33b51e171155e547507252ce8 *R/ALPS.rdb
e7f30972f34838fd282d1cb07adeaabb *R/ALPS.rdx
71e6e9b7be169a92c438d3cc2fbb9aaf *doc/ALPS-vignette.R
7ea2d740bb8358702b8099c00bcfb3d8 *doc/ALPS-vignette.Rmd
e9d697ad15a1b7a738e2569a202149e3 *doc/ALPS-vignette.html
12ed6bb24b412f5c5f504e303ec4fed9 *doc/index.html
c4cc703cd4402476fb4d0ab5a0082592 *extdata/bw/ACCx_025FE5F8_T1.bw
f7c2637e381c96a79e3b5c0b6dc4eb25 *extdata/bw/ACCx_025FE5F8_T2.bw
ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_1.bed
ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_2.bed
9314e8ce47fa6a45160df71422933311 *extdata/bw/ALPS_example_datatable.txt
ff1f3375ca7547ee83d5fd8e0b8f4c71 *extdata/bw/BRCA_000CFD9F_T2.bw
3328ce768cc212f5226d12f4dc864c93 *extdata/bw/BRCA_01112370_T1.bw
f4430a0b9dc7921ec2b09e1df648a301 *extdata/bw/BRCA_1.bed
f4430a0b9dc7921ec2b09e1df648a301 *extdata/bw/BRCA_2.bed
490f0c5d7f94dbd85ce4c37b8493b20a *extdata/bw/GBMx_09C0DCE7_T1.bw
cd15e4c493b7e66612136be4eca3923f *extdata/bw/GBMx_09C0DCE7_T2.bw
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_1.bed
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_2.bed
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_1.bed
a25476ecb2893ff7d5ce0e0115fcc422 *extdata/bw/LGGx_116B070A_T1.bw
cdf81dbc86f32abf4129f43cad4da50f *extdata/bw/LGGx_116B070A_T2.bw
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_2.bed
45bb10fb079caf5ba45b49183c0d77db *extdata/motifs/MA0147.2.jaspar
6591fa16fafac302ddb524e8e4096b66 *extdata/motifs/MA0147.2.meme
969f0989ce659d7a7474a73af0d97179 *extdata/motifs/MA0147.2.pfm
0c72893942d6efe6bab75e260413ce13 *extdata/motifs/MA0147.2.transfac
d68cf9b910d4a12a0729d8a0bae64b43 *extdata/motifs/cmyc.homer
7a1917605c787487c108177c94f8506b *extdata/overlap_violins/data_table_4_overlapviolins.txt
98aea2aba1fb3cc07fb309e5601e268d *extdata/overlap_violins/enrichemnts_4_overlapviolins.txt
805508500e2445e830116317946ce0d2 *figures/README-ALPS-overview.png
e701060a1ed9f30f43f5ccac6cf6e508 *help/ALPS.rdb
c699707d1d4a642f94c9710f66811946 *help/ALPS.rdx
51b2df6a0bc39bfe2f9459e55bec5af1 *help/AnIndex
4c0946c87733d171e9d9cd48343dd8d7 *help/aliases.rds
601a484683536714701ce065d02337c5 *help/paths.rds
434c3938c55daf9337ac9433675be009 *html/00Index.html
ebb92da04fcd5ecd7e8b6f0451971097 *html/ALPS-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a8a597b63fe562c4fca98453fc7cc439 *html/get_genomic_annotations.html
25d4720c6f4357afb5933a3481e5f80d *html/get_variable_regions.html
bcb147bbffbd0dbafa763230609bad47 *html/merge_GR.html
06ee5a86628848cd4db6148a98aead3e *html/multiBigwig_summary.html
584cb83bf6441f69ae169dfac4fd1759 *html/pipe.html
7b34b2e1b05f7dc8150aaf07b9b696a3 *html/plot_browser_tracks.html
f804d41cd7a2af6da60e0c0a0889d6eb *html/plot_correlation.html
d8d3ab982a3d87b029506df50ca1d136 *html/plot_enrichments.html
e00e01dac3bd5cf5d46b6f900e219f76 *html/plot_genomic_annotations.html
6d20a6cc2e45fcc417525f749590f2e9 *html/plot_motif_logo.html
1a1980532ba40b66003dc304a2ccfab7 *html/process_homer.html
7421ffaef827c8b6ad74af5e32588700 *html/process_jaspar.html
963e8d17b6c58674d1601db25966d1ba *html/process_meme.html
8ac120f2b9d3e96e7e0992d81c8046eb *html/process_pfm.html
06595f5b9fb9ee7644d112f3015d6ae2 *html/process_transfac.html
17c22bfaec515572ffe80e4a74e0a479 *script/DATASET.R
