Annotation for the copy number alteration association and enrichment analyses with facopy


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Documentation for package ‘facopy.annot’ version 1.0.0

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facopy.annot-package Companion annotation package for facopy

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facopy_biocarta Biocarta Pathways with symbol identifiers
facopy_kegg kegg Pathways with symbol identifiers
facopy_msigdb facopy MSigDB Data
facopy_msigdbNames facopy MSigDB Data Names
facopy_reactome reactome Pathways with symbol identifiers

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hg18_armLimits hg18_armLimits
hg18_db_gsk_bladder hg18_db_gsk_bladder
hg18_db_gsk_blood hg18_db_gsk_blood
hg18_db_gsk_bone hg18_db_gsk_bone
hg18_db_gsk_brain hg18_db_gsk_brain
hg18_db_gsk_breast hg18_db_gsk_breast
hg18_db_gsk_cervix hg18_db_gsk_cervix
hg18_db_gsk_cns hg18_db_gsk_cns
hg18_db_gsk_colon hg18_db_gsk_colon
hg18_db_gsk_connective_tissue hg18_db_gsk_connective_tissue
hg18_db_gsk_esophagus hg18_db_gsk_esophagus
hg18_db_gsk_eye hg18_db_gsk_eye
hg18_db_gsk_kidney hg18_db_gsk_kidney
hg18_db_gsk_liver hg18_db_gsk_liver
hg18_db_gsk_lung hg18_db_gsk_lung
hg18_db_gsk_muscle hg18_db_gsk_muscle
hg18_db_gsk_ovary hg18_db_gsk_ovary
hg18_db_gsk_pancreas hg18_db_gsk_pancreas
hg18_db_gsk_pharynx hg18_db_gsk_pharynx
hg18_db_gsk_placenta hg18_db_gsk_placenta
hg18_db_gsk_prostate hg18_db_gsk_prostate
hg18_db_gsk_rectum hg18_db_gsk_rectum
hg18_db_gsk_sarcoma hg18_db_gsk_sarcoma
hg18_db_gsk_stomach hg18_db_gsk_stomach
hg18_db_gsk_synovium hg18_db_gsk_synovium
hg18_db_gsk_thyroid hg18_db_gsk_thyroid
hg18_db_gsk_uterus hg18_db_gsk_uterus
hg18_db_nci60 hg18_db_nci60
hg18_db_tcga_blca hg18_db_tcga_blca
hg18_db_tcga_brca hg18_db_tcga_brca
hg18_db_tcga_cesc hg18_db_tcga_cesc
hg18_db_tcga_coad hg18_db_tcga_coad
hg18_db_tcga_gbm hg18_db_tcga_gbm
hg18_db_tcga_hnsc hg18_db_tcga_hnsc
hg18_db_tcga_kirc hg18_db_tcga_kirc
hg18_db_tcga_kirp hg18_db_tcga_kirp
hg18_db_tcga_lgg hg18_db_tcga_lgg
hg18_db_tcga_lihc hg18_db_tcga_lihc
hg18_db_tcga_luad hg18_db_tcga_luad
hg18_db_tcga_lusc hg18_db_tcga_lusc
hg18_db_tcga_ov hg18_db_tcga_ov
hg18_db_tcga_prad hg18_db_tcga_prad
hg18_db_tcga_read hg18_db_tcga_read
hg18_db_tcga_stad hg18_db_tcga_stad
hg18_db_tcga_thca hg18_db_tcga_thca
hg18_db_tcga_ucec hg18_db_tcga_ucec
hg18_feature_cancergene hg18_feature_cancergene
hg18_feature_ensembl hg18_feature_ensembl
hg18_feature_lincRNA hg18_feature_lincRNA
hg18_feature_mirnas hg18_feature_mirnas
hg18_feature_oncogene hg18_feature_oncogene
hg18_feature_tumorsupressor hg18_feature_tumorsupressor
hg19_armLimits hg19_armLimits
hg19_db_gsk_bladder hg19_db_gsk_bladder
hg19_db_gsk_blood hg19_db_gsk_blood
hg19_db_gsk_bone hg19_db_gsk_bone
hg19_db_gsk_brain hg19_db_gsk_brain
hg19_db_gsk_breast hg19_db_gsk_breast
hg19_db_gsk_cervix hg19_db_gsk_cervix
hg19_db_gsk_cns hg19_db_gsk_cns
hg19_db_gsk_colon hg19_db_gsk_colon
hg19_db_gsk_connective_tissue hg19_db_gsk_connective_tissue
hg19_db_gsk_esophagus hg19_db_gsk_esophagus
hg19_db_gsk_eye hg19_db_gsk_eye
hg19_db_gsk_kidney hg19_db_gsk_kidney
hg19_db_gsk_liver hg19_db_gsk_liver
hg19_db_gsk_lung hg19_db_gsk_lung
hg19_db_gsk_muscle hg19_db_gsk_muscle
hg19_db_gsk_ovary hg19_db_gsk_ovary
hg19_db_gsk_pancreas hg19_db_gsk_pancreas
hg19_db_gsk_pharynx hg19_db_gsk_pharynx
hg19_db_gsk_placenta hg19_db_gsk_placenta
hg19_db_gsk_prostate hg19_db_gsk_prostate
hg19_db_gsk_rectum hg19_db_gsk_rectum
hg19_db_gsk_sarcoma hg19_db_gsk_sarcoma
hg19_db_gsk_stomach hg19_db_gsk_stomach
hg19_db_gsk_synovium hg19_db_gsk_synovium
hg19_db_gsk_thyroid hg19_db_gsk_thyroid
hg19_db_gsk_uterus hg19_db_gsk_uterus
hg19_db_nci60 hg19_db_nci60
hg19_db_tcga_blca hg19_db_tcga_blca
hg19_db_tcga_brca hg19_db_tcga_brca
hg19_db_tcga_cesc hg19_db_tcga_cesc
hg19_db_tcga_coad hg19_db_tcga_coad
hg19_db_tcga_gbm hg19_db_tcga_gbm
hg19_db_tcga_hnsc hg19_db_tcga_hnsc
hg19_db_tcga_kirc hg19_db_tcga_kirc
hg19_db_tcga_kirp hg19_db_tcga_kirp
hg19_db_tcga_lgg hg19_db_tcga_lgg
hg19_db_tcga_lihc hg19_db_tcga_lihc
hg19_db_tcga_luad hg19_db_tcga_luad
hg19_db_tcga_lusc hg19_db_tcga_lusc
hg19_db_tcga_ov hg19_db_tcga_ov
hg19_db_tcga_prad hg19_db_tcga_prad
hg19_db_tcga_read hg19_db_tcga_read
hg19_db_tcga_stad hg19_db_tcga_stad
hg19_db_tcga_thca hg19_db_tcga_thca
hg19_db_tcga_ucec hg19_db_tcga_ucec
hg19_feature_cancergene hg19_feature_cancergene
hg19_feature_ensembl hg19_feature_ensembl
hg19_feature_lincRNA hg19_feature_lincRNA
hg19_feature_mirnas hg19_feature_mirnas
hg19_feature_oncogene hg19_feature_oncogene
hg19_feature_tumorsupressor hg19_feature_tumorsupressor

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mm8_armLimits mm8_armLimits
mm8_feature_ensembl mm8_feature_ensembl
mm8_feature_mirnas mm8_feature_mirnas