Package: GenomicRanges
Title: Representation and manipulation of genomic intervals
Description: The ability to efficiently store genomic annotations and
	alignments is playing a central role when it comes to analyze
	high-throughput sequencing data (a.k.a. NGS data). The package
	defines general purpose containers for storing genomic intervals
	as well as more specialized containers for storing alignments
	against a reference genome.
Version: 1.6.7
Author: P. Aboyoun, H. Pages and M. Lawrence
Maintainer: Bioconductor Package Maintainer
        <maintainer@bioconductor.org>
biocViews: Genetics, Sequencing, HighThroughputSequencing, Annotation
Depends: R (>= 2.8.0), methods, IRanges (>= 1.11.26)
Imports: methods, IRanges
LinkingTo: IRanges
Suggests: RUnit, BSgenome, GenomicFeatures, Rsamtools (>= 1.5.66),
        EatonEtAlChIPseq (>= 0.0.3), leeBamViews, edgeR, DESeq,
        rtracklayer, org.Sc.sgd.db, BSgenome.Scerevisiae.UCSC.sacCer2,
        DEXSeq, pasilla
License: Artistic-2.0
Collate: utils.R cigar-utils.R transcript-utils.R seqinfo.R strand.R
        Seqinfo-class.R GenomicRanges-class.R GenomicRangesList-class.R
        GenomicRanges-comparison.R GRanges-class.R GRangesList-class.R
        GappedAlignments-class.R SummarizedExperiment-class.R
        coverage-methods.R setops-methods.R findOverlaps-methods.R
        countGenomicOverlaps-methods.R seqlevels-utils.R
        resolveHits-methods.R summarizeOverlaps-methods.R
        test_GenomicRanges_package.R zzz.R
Packaged: 2012-02-07 05:59:46 UTC; biocbuild
