# Transcriptional Regulatory Inference from Genetics of Gene ExpRession

## Documentation for package ‘trigger’ version 1.0.2

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

Multiple-locus linkage | Multi-Locus Linkage (Epistasis) Analysis
plot | Graphical Display of Trigger Analysis
plot-method | Graphical Display of Trigger Analysis
trigger-class | A class to store and analyze data for Transcriptional Regulation Inference from Genetics of Gene ExpRession
trigger.build | Format the input data and create an Trigger object
trigger.eigenR2 | Estimate the proportion of genome-wide variation explained by each eQTL
trigger.eigenR2-method | Estimate the proportion of genome-wide variation explained by each eQTL
trigger.export2cross | Export Trigger data to R/qtl's cross class object
trigger.export2cross-method | Export Trigger data to R/qtl's cross class object
trigger.link | Genomewide eQTL analysis
trigger.link-method | Genomewide eQTL analysis
trigger.loclink | Estimate local-linkage probability for each gene
trigger.loclink-method | Estimate local-linkage probability for each gene
trigger.mlink | Multi-Locus Linkage (Epistasis) Analysis
trigger.mlink-method | Multi-Locus Linkage (Epistasis) Analysis
trigger.net | Network-Trigger analysis
trigger.net-method | Network-Trigger analysis
trigger.netPlot2ps | Write the network from a trigger probability matrix to a postscript file
trigger.netPlot2ps-method | Write the network from a trigger probability matrix to a postscript file
trigger.trait | Trait-trigger analysis
trigger.trait-method | Trait-trigger analysis
yeast | A yeast data set for Transcriptional Regulation Inference from Genetics of Gene ExpRession