FASTASummary-class      'FASTASummary' class representing the summaries
                        of a FASTA file
FASTQSummary-class      'FASTQSummary' class representing the summaries
                        of a FASTQ file
SequenceSummary-class   'SequenceSummary' class representing the
                        summaries of a sequence file
makeReport-methods      Make an HTML report from a FASTASummary of
                        FASTQSummary object
plotBases-methods       Plot Bases by Position
plotGC-methods          Plot per Base GC Content by Position
plotQuals-methods       Plot a Base Quality Boxplot by Position
plotSeqLengths-methods
                        Plot Histogram of Sequence Lengths
readSeqFile             Read and Summarize a Sequence (FASTA or FASTQ)
                        File
