Package: oligo
Version: 1.18.1
Title: Preprocessing tools for oligonucleotide arrays.
Author: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk>, Rafael A. Irizarry with contributions from Ben Bolstad, Vince Carey, Robert Gentleman, Wolfgang Huber
Maintainer: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk>
Depends: R (>= 2.13.0), oligoClasses (>= 1.13.9)
Imports: affyio (>= 1.19.4), affxparser (>= 1.23.1), Biobase (>=
        2.11.8), Biostrings, DBI (>= 0.2-5), ff, graphics, methods,
        preprocessCore (>= 1.13.5), splines, stats, utils, zlibbioc
Enhances: ff, snow
LinkingTo: preprocessCore
Suggests: hapmap100kxba, pd.mapping50k.xba240, pd.huex.1.0.st.v2,
        pd.hg18.60mer.expr, maqcExpression4plex, genefilter, limma,
        RColorBrewer, oligoData
Description: A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).
License: LGPL (>= 2)
Collate: AllGenerics.R methods-GeneFeatureSet.R
        methods-ExonFeatureSet.R methods-ExpressionFeatureSet.R
        methods-ExpressionSet.R methods-LDS.R methods-FeatureSet.R
        methods-SnpFeatureSet.R methods-SnpCnvFeatureSet.R
        methods-TilingFeatureSet.R methods-DBPDInfo.R
        methods-background.R methods-normalization.R
        methods-summarization.R read.celfiles.R read.xysfiles.R
        utils-general.R todo-snp.R functions-crlmm.R functions-snprma.R
        justSNPRMA.R justCRLMM.R methods-snp6.R methods-genotype.R
        PLM_internal.R fitPLM.R methods-PLMset.R zzz.R
LazyLoad: Yes
biocViews: Microarray, OneChannel, TwoChannel, Preprocessing, SNP,
        DifferentialExpression, ExonArray, GeneExpression,
        Bioinformatics, DataImport
Packaged: 2012-01-12 07:25:53 UTC; biocbuild
Built: R 2.14.1; i386-pc-mingw32; 2012-01-12 12:31:18 UTC; windows
Archs: i386, x64
