BinData-class           Class "BinData"
MosaicsFit-class        Class "MosaicsFit"
MosaicsPeak-class       Class "MosaicsPeak"
constructBins           Construct bin-level ChIP-sep data from an
                        aligned read file
estimates               Extract estimates of the fitted MOSAiCS model
export                  Export peak calling results to text files
mosaics-package         MOSAiCS (MOdel-based one and two Sample
                        Analysis and Inference for ChIP-Seq)
mosaicsFit              Fit MOSAiCS model
mosaicsPeak             Call peaks based on fitted MOSAiCS model
mosaicsRunAll           Analyze ChIP-seq data using the MOSAiCS
                        framework
readBins                Import bin-level ChIP-sep data
