# Tools for analyzing Micro Array experiments

## Documentation for package ‘maanova’ version 1.24.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.
- Code demos. Use demo() to run them.

## Help Pages

abf1 | Data for a 18-array Affymetrix experiment
adjPval | Generate FDR adjusted P values for F test result.
arrayview | View the layout of input data
consensus | Build consensus tree out of bootstrap cluster result
dyeswapfilter | Gene filter for dye-swap experiment
fill.missing | Fill in missing data
fitmaanova | Fit ANOVA model for Micro Array experiment
fom | Figure of Merit
geneprofile | Expression plot for selected genes
gridcheck | Plot grid-by-grid data comparison for arrays
kidney | Kidney Data from CAMDA
kidney.raw | Kidney Data from CAMDA
macluster | Clustering analysis for Microarray experiment
matest | Statistical test for Microarray experiment
PairContrast | Pairwise comparison matrix
read.madata | Read Microarray data
resiplot | Residual plot for Microarray Experiment
riplot | Ratio intensity plot for 2-dye Microarray experiment
Rmaanova.version | Display the current version of the package
subset.madata | Subsetting Microarray data objects
summarytable | Summarize the matest result.
transform.madata | Micro Array experiment data transformation
varplot | Variance component plot
volcano | Volcano plot for F test results
write.madata | Write Micro Array data to a TAB delimited simple text file