| geom_chevron | Chevron Geoms for GRanges object |
| geom_hotregion | Adding hotregion for stacked overview (genome-wide) |
| plotFragLength | Plot estimated fragment length for paired-end RNA-seq data |
| plotFragLength-method | Plot estimated fragment length for paired-end RNA-seq data |
| plotGrandLinear | Manhattan for GWAS |
| plotMismatchSum | Plot mismatch summary for short read |
| plotOverview | Plot stacked overview for genome |
| plotRangesLinkedToData | Plot Ranges Linked with Data |
| plotSingleChrom | Plot single chromosome with cytoband |
| plotSpliceSum | Plot Splice Summary from RNA-seq data |
| plotSpliceSum-method | Plot Splice Summary from RNA-seq data |
| qplot | Generic qplot function |
| qplot-method | Generic qplot function |
| rescale | rescale ggplot object |
| rescale-method | rescale ggplot object |
| tracks | Tracks for genomic graphics |