geom_chevron	geom_chevron
geom_hotregion	geom_hotregion
plotFragLength	plotFragLength
plotFragLength,character,GRanges-method	plotFragLength
plotGrandLinear	plotGrandLinear
plotMismatchSum	plotMismatchSum
plotOverview	plotOverview
plotRangesLinkedToData	plotRangesLinkedToData
plotSingleChrom	plotSingleChrom
plotSpliceSum	plotSpliceSum
plotSpliceSum,character,GRangesList-method	plotSpliceSum
plotSpliceSum,character,TranscriptDb-method	plotSpliceSum
qplot	qplot-method
qplot,BamFile-method	qplot-method
qplot,BSgenome-method	qplot-method
qplot,character-method	qplot-method
qplot,data.frame-method	qplot-method
qplot,GappedAlignments-method	qplot-method
qplot,GRanges-method	qplot-method
qplot,GRangesList-method	qplot-method
qplot,integer-method	qplot-method
qplot,IRanges-method	qplot-method
qplot,matrix-method	qplot-method
qplot,numeric-method	qplot-method
qplot,Rle-method	qplot-method
qplot,RleList-method	qplot-method
qplot,TranscriptDb-method	qplot-method
rescale	rescale-method
rescale,ggplot-method	rescale-method
rescale,numeric-method	rescale-method
tracks	tracks
