# Genome sequencing project metadata

## Documentation for package ‘genomes’ version 2.0.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

%like% | Pattern matching using wildcards
complete | Complete microbial genome dates
doublingTime | Doubling time for genome projects
enaExperiment | ENA SRA experiment details
enaFiles | ENA SRA submitted or fastq files
enaProject | ENA projects
enaSRA | ENA sequence read archive
enaStudy | ENA SRA study details
enaSubmission | ENA SRA submission dates
enaTaxonomy | ENA taxonomy statistics
genomes | Introduction to the genomes package
genomes-lines | Add lines to a genomes plot
genomes-plot | Genome table plots by release date
genomes-subset | Subset genome tables
genomes-summary | Genome table summaries
genomes-update | Genome table updates
genus | Extract the genus name
image2 | Display a matrix image
lenvs | Metagenome sequencing projects at NCBI
leuks | Eukaryotic genome projects at NCBI
like | Pattern matching using wildcards
lines.genomes | Add lines to a genomes plot
lproks | Microbial genome projects at NCBI
month | Parse a date string
ncbiGenome | NCBI Genome Database
ncbiInfo | NCBI Entrez databases and fields
ncbiNucleotide | NCBI Nucleotide database
ncbiProject | NCBI BioProject database
ncbiPubmed | NCBI PubMed database
ncbiRelease | NCBI revision history
ncbiSubmit | NCBI submission dates
ncbiTaxonomy | NCBI taxonomy database
plot.genomes | Genome table plots by release date
plotby | Plot groups of genomes by release date
print.genomes | Print genome tables
pub | Complete microbial genome publications
species | Extract the species name
sra | Microbial SRA samples at the ENA
subset.genomes | Subset genome tables
summary.genomes | Genome table summaries
table2 | Format and sort a contigency table
top | Find the most common values
update.genomes | Genome table updates
virus | Virus genomes at NCBI
year | Parse a date string