flowWorkspace-package	flowWorkspace-package
.bGate	flowWorkspace-internal
.booleanGate	flowWorkspace-internal
.children	flowWorkspace-internal
.ellipseFit	flowWorkspace-internal
.extractGate	flowWorkspace-internal
.flowJoTransform	flowWorkspace-internal
.getCalibrationTable	flowWorkspace-internal
.getCalibrationTableNames	flowWorkspace-internal
.getCalibrationTableSearch	flowWorkspace-internal
.getCompensationMatrices	flowWorkspace-internal
.getGains	flowWorkspace-internal
.getKeywords	flowWorkspace-internal
.getPopulations	flowWorkspace-internal
.getSampleGroups	flowWorkspace-internal
.getSamples	flowWorkspace-internal
.getStainChannels	flowWorkspace-internal
.hasChildren	flowWorkspace-internal
.hasGate	flowWorkspace-internal
.hasNN	flowWorkspace-internal
.isLeaf	flowWorkspace-internal
.isPopulation	flowWorkspace-internal
.isRoot	flowWorkspace-internal
.mergetables	flowWorkspace-internal
.parent	flowWorkspace-internal
.S3MethodsClasses	flowWorkspace-internal
closeWorkspace	closeWorkspace
closeWorkspace,flowJoWorkspace-method	closeWorkspace
closeWorkspace-methods	closeWorkspace
ellipsoidGate2FlowJoVertices	ellipsoidGate2FlowJoVertices
ellipsoidGate2FlowJoVertices,ellipsoidGate-method	ellipsoidGate2FlowJoVertices
ellipsoidGate2FlowJoVertices-methods	ellipsoidGate2FlowJoVertices
execute	execute
execute,GatingHierarchy-method	execute
execute-methods	execute
exportAsFlowJoXML	exportAsFlowJoXML
exportAsFlowJoXML,ellipsoidGate-method	exportAsFlowJoXML
exportAsFlowJoXML,intersectFilter-method	exportAsFlowJoXML
exportAsFlowJoXML,list-method	exportAsFlowJoXML
exportAsFlowJoXML,polygonGate-method	exportAsFlowJoXML
exportAsFlowJoXML,rectangleGate-method	exportAsFlowJoXML
exportAsFlowJoXML,workFlow-method	exportAsFlowJoXML
exportAsFlowJoXML-methods	exportAsFlowJoXML
flowJoWorkspace-class	flowJoWorkspace-class
flowWorkspace	flowWorkspace-package
flowWorkspace2flowCore	flowWorkspace2flowCore
flowWorkspace2flowCore,flowJoWorkspace-method	flowWorkspace2flowCore
flowWorkspace2flowCore,GatingHierarchy-method	flowWorkspace2flowCore
flowWorkspace2flowCore,GatingSet-method	flowWorkspace2flowCore
flowWorkspace2flowCore-methods	flowWorkspace2flowCore
GatingHierarchy-class	GatingHierarchy-class
GatingSet-class	GatingSet-class
getBoundaries	getBoundaries
getBoundaries,GatingHierarchy,character-method	getBoundaries
getBoundaries-methods	getBoundaries
getChildren	getChildren
getChildren,GatingHierarchy,character-method	getChildren
getChildren-methods	getChildren
getCompensationMatrices	getCompensationMatrices
getCompensationMatrices,flowJoWorkspace-method	getCompensationMatrices
getCompensationMatrices-methods	getCompensationMatrices
getData	getData
getData,GatingHierarchy-method	getData
getData,GatingSet-method	getData
getData,graphNEL-method	getData
getData-methods	getData
getDimensions	getDimensions
getDimensions,GatingHierarchy,character-method	getDimensions
getDimensions-methods	getDimensions
getFJWSubsetIndices	getFJWSubsetIndices
getGate	getGate
getGate,GatingHierarchy,character-method	getGate
getGate,GatingHierarchy,numeric-method	getGate
getGate,GatingSet,numeric-method	getGate
getIndices	getIndices
getIndices,GatingHierarchy,character-method	getIndices
getIndices-methods	getIndices
getKeywords	getKeywords
getKeywords,flowJoWorkspace,character-method	getKeywords
getKeywords,GatingHierarchy,missing-method	getKeywords
getKeywords,GatingSet,character-method	getKeywords
getKeywords,GatingSet,numeric-method	getKeywords
getKeywords-methods	getKeywords
getNodes	getNodes
getNodes,GatingHierarchy-method	getNodes
getNodes-methods	getNodes
getParent	getParent
getParent,GatingHierarchy,character-method	getParent
getParent,GatingHierarchy,numeric-method	getParent
getParent-methods	getParent
getPopStats	getPopStats
getPopStats,GatingHierarchy-method	getPopStats
getPopStats-methods	getPopStats
getProp	getProp
getProp,GatingHierarchy,character-method	getProp
getProp-methods	getProp
getSample	getSample
getSample,GatingHierarchy-method	getSample
getSample,graphNEL-method	getSample
getSample-method	getSample
getSampleGroups	getSampleGroups
getSampleGroups,flowJoWorkspace-method	getSampleGroups
getSampleGroups-methods	getSampleGroups
getSamples	getSamples
getSamples,flowJoWorkspace-method	getSamples
getSamples,GatingSet-method	getSamples
getSamples-methods	getSamples
getTotal	getTotal
getTotal,GatingHierarchy,character-method	getTotal
getTotal-methods	getTotal
getTransformations	getTransformations
getTransformations,flowJoWorkspace-method	getTransformations
getTransformations-methods	getTransformations
keyword	keyword-methods
keyword,GatingHierarchy,character	keyword-methods
keyword,GatingHierarchy,character-method	keyword-methods
keyword,GatingSet,character	keyword-methods
keyword,GatingSet,character-method	keyword-methods
lapply,ANY-method	lapply-methods
lapply,GatingSet-method	lapply-methods
lapply-methods	lapply-methods
length,GatingSet-method	length-methods
length-methods	length-methods
openWorkspace	openWorkspace
openWorkspace,character-method	openWorkspace
openWorkspace-methods	openWorkspace
parseWorkspace	parseWorkspace
parseWorkspace,flowJoWorkspace-method	parseWorkspace
parseWorkspace-methods	parseWorkspace
plot	plot
plot,GatingHierarchy,missing-method	plot
plot-methods	plot
plotGate	plotGate
plotGate,GatingHierarchy,character-method	plotGate
plotGate,GatingHierarchy,numeric-method	plotGate
plotGate-methods	plotGate
plotPopCV	plotPopCV
plotPopCV,GatingHierarchy-method	plotPopCV
plotPopCV,GatingSet-method	plotPopCV
plotPopCV-methods	plotPopCV
plotWf	plotWf
show,flowJoWorkspace-method	summary-methods
show,GatingHierarchy-method	summary-methods
show,GatingSet-method	summary-methods
show-methods	summary-methods
summary,ANY-method	summary-methods
summary,flowJoWorkspace-method	summary-methods
summary-methods	summary-methods
[,GatingSet,ANY-method	GatingSet-class
[<-,GatingSet,ANY,ANY,GatingSet-method	replaceGatingSet
[[,GatingSet,ANY-method	GatingSet-class
[[<-,GatingSet,ANY,ANY,GatingHierarchy-method	replaceGatingSetList
