GatingHierarchy-class   Class '"GatingHierarchy"'
GatingSet-class         Class '"GatingSet"'
[<-,GatingSet,ANY,ANY,GatingSet-method
                        Replace parts of a GatingSet
[[<-,GatingSet,ANY,ANY,GatingHierarchy-method
                        Replace parts of a GatingSet
closeWorkspace          Close a flowJoWorkspace
ellipsoidGate2FlowJoVertices
                        Get the vertices of an ellipsoid gate needed to
                        export it to flowJo
execute                 Apply the GatingHierarchy to data, computing
                        population statistics along the way.
exportAsFlowJoXML       Export a workFlow to FlowJo XML
flowJoWorkspace-class   Class '"flowJoWorkspace"'
flowWorkspace-package   Import and replicate flowJo workspaces and
                        gating schemes using flowCore.
flowWorkspace2flowCore
                        Convert the GatingHierarchies in a GatingSet to
                        a flowCore workflow.
getBoundaries           Get the boundaries of a flowJo gate
getChildren             Returns a list of child populations of the
                        current node in the 'GatingHierarchy'
getCompensationMatrices
                        Retrieve the compensation matrices from a
                        flowJo Workspace
getData                 Return the flowFrame associated with a
                        GatingHierarchy
getDimensions           Return the dimensions on which a gate is
                        applied within a GatingHierarchy
getFJWSubsetIndices     Fetch the indices for a subset of samples in a
                        flowJo workspace, based on a keyword value pair
getGate                 Return the flowCore gate definition associated
                        with a node in a GatingHierarchy.
getIndices              Get the membership indices for each event with
                        respect to a particular gate in a
                        GatingHierarchy
getKeywords             Get List of Keywords for a Flow Sample
getNodes                Get the names of all nodes in a gating
                        hierarchy
getParent               Return the name of the parent population of the
                        current population in the GatingHierarchy
getPopStats             Return a table of population statistics for all
                        populations in a GatingHierarchy
getProp                 Get the population proportions of a node
                        (population) in a GatingHierarchy
getSample               Get the sample name associated with a
                        GatingHierarchy
getSampleGroups         Get a table of sample groups from a flowJo
                        workspace
getSamples              Get a list of samples in a flowJo workspace or
                        a GatingSet
getTotal                Fetch the total number of events in a gate
                        defined in a GatingHierarchy
getTransformations      Return a list of transformations in a flowJo
                        workspace
keyword                 Methods to retrieve keywords associated with an
                        FCS sample
lapply-methods          Methods for iterating over a gating set
length-methods          Methods to get the length of a GatingSet
openWorkspace           Open a flowJo workspace
parseWorkspace          Parse a flowJo Workspace
plot                    Plot a GatingHierarchy
plotGate                Plot a flowJo Gate and Cell Population
plotPopCV               Plot the coefficient of variation between
                        flowJo and flowCore population statistics for
                        each population in a gating hierarchy.
plotWf                  plot a workflow
summary-methods         Summarize a flowJoWorkspace object
