# Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.

## Documentation for package ‘flowFlowJo’ version 1.12.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

flowFlowJo-package | Turn FlowJo workspaces into flowCore compliant objects
collectSummaryFlowInfo | Collect Population Statistics on Flow Files
collectSummaryFlowInfo-method | Collect Population Statistics on Flow Files
createFlowReport | Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
createFlowReport-method | Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
fcsSummary-class | Collect Population Statistics on Flow Files
fcsSummaryList-class | Collect Population Statistics on Flow Files
flowFlowJo | Turn FlowJo workspaces into flowCore compliant objects
flowJoCompensate | Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate-method | Compensate flow cytometry data the same way as FlowJo does
flowJoCompensate-methods | Compensate flow cytometry data the same way as FlowJo does
flowJoList-class | Parse one or more FlowJo workspaces
flowJoObj-class | Parse one or more FlowJo workspaces
gateNodeToFilterObject | Parse one or more FlowJo workspaces
gateNodeToFilterObject-method | Parse one or more FlowJo workspaces
gatherFlowJoGates | Parse one or more FlowJo workspaces
gatherFlowJoGates-method | Parse one or more FlowJo workspaces
gatherFlowJoTransformations | Parse one or more FlowJo workspaces
gatherFlowJoTransformations-method | Parse one or more FlowJo workspaces
getFlowJoCompMatrix | Parse one or more FlowJo workspaces
getFlowJoCompMatrix-method | Parse one or more FlowJo workspaces
getFlowJoGates | getFlowJoGates
getFlowJoGates-method | getFlowJoGates
getFlowJoSummary | Summarize FlowJo Workspaces
getFlowJoVersion | Parse one or more FlowJo workspaces
getFlowJoVersion-method | Parse one or more FlowJo workspaces
getWellId | Parse one or more FlowJo workspaces
getWellId-method | Parse one or more FlowJo workspaces
readFlowJoFile | Parse one or more FlowJo workspaces
readFlowJoFile-method | Parse one or more FlowJo workspaces
readFlowJoList | Parse one or more FlowJo workspaces
simplifyGateNames | Standardize flow cytometry gate names
simplifyGateNames-method | Standardize flow cytometry gate names