ExomeCopy-class         Class "ExomeCopy"
copyCountSegments       Segments of identical copy count from exomeCopy
countBamInGRanges       Count reads from BAM file in genomic ranges
exomeCopy               Fit the exomeCopy or exomeCopyVar model to the
                        observed counts.
exomeCopy-package       Detection of CNV in exome/targeted sequencing
                        data
exomecounts             Sample counts from 16 exome sequencing samples
                        from 1000 Genomes Project
negLogLike              Generalized negative log likelihood and Viterbi
                        algorithms
plot.ExomeCopy          Plot function for exomeCopy
subdivideGRanges        Subdivide ranges of a GRanges object into
                        nearly equal width ranges
