import(methods)

exportClasses(CuffSet,
			CuffData,
			CuffDist,
			CuffFeature, 
			CuffFeatureSet, 
			CuffGene, 
			CuffGeneSet
)

exportMethods(
			annotation,
			genes,
			isoforms,
			TSS,
			CDS,
			promoters,
			splicing,
			relCDS,
			fpkm,
			distValues,
			csDensity,
			csScatter,
			csVolcano,
			csBoxplot,
			csHeatmap,
			csCluster,
			fpkmMatrix,
			diffData,
			features,
			featureNames,
			samples,
			expressionPlot,
			expressionBarplot,
			getGene,
			getGenes,
			addFeatures,
			getLevels,
			findSimilar
)

export("readCufflinks",
		"JSdist",
		"JSdistVec",
		"shannon.entropy",
		"makeprobs",
		"makeprobsvec"
		)

#importClassesFrom("Biobase","Versioned")
#importClassesFrom("Biobase","VersionedBiobase")