Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
        Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.12.1
Date: 2010-12-10
Author: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>, Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.edu.au>, Ingo Ruczinski <iruczins@jhsph.edu>, Rafael A Irizarry
Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>,
        Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie
        <mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
License: Artistic-2.0
Depends: R (>= 2.13.0), methods, Biobase (>= 2.11.9), oligoClasses (>=
        1.15.41)
Imports: affyio (>= 1.19.2), ellipse, ff (>= 2.2-1), genefilter (>=
        1.33.0), mvtnorm, preprocessCore (>= 1.13.4), splines, stats,
        SNPchip, utils, lattice
Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.4), snpStats,
        ellipse, RUnit, ff
Collate: AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R
        methods-CNSetLM.R methods-eSet.R methods-SnpSuperSet.R
        methods-PredictionRegion.R cnrma-functions.R cnset-accessors.R
        crlmm-functions.R crlmmGT2.R crlmm-illumina.R
        snprma-functions.R utils.R zzz.R test_crlmm_package.R
LazyLoad: yes
biocViews: Microarray, Preprocessing, SNP, Bioinformatics,
        CopyNumberVariants
Packaged: 2011-11-16 07:53:44 UTC; biocbuild
Built: R 2.14.0; i386-pc-mingw32; 2011-11-16 12:11:29 UTC; windows
Archs: i386, x64
