# Conditional quantile normalization

## Documentation for package ‘cqn’ version 1.0.1

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

cqn | CQN (conditional quantile normalization) for RNA-Seq data
cqn.fixedlength | CQN (conditional quantile normalization) for RNA-Seq data
cqnplot | Plot the systematic effect estimated as part of a CQN normalization.~
montgomery.subset | Mongtomery RNA-seq data.
sizeFactors.subset | Mongtomery RNA-seq data.
uCovar | Mongtomery RNA-seq data.