# Tools for performing taxonomic assignment.

## Documentation for package ‘clstutils’ version 1.2.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

clstutils-package | Sequence based classification and selection of reference sequences.
classifyPlacements | Taxonomic classification by phylogenetic placement.
clstutils | Sequence based classification and selection of reference sequences.
findOutliers | Identify outlier objects given a square distance matrix.
maxDists | Select a maximally diverse set of items given a distance matrix.
prettyTree | Draw an annotated phylogenetic tree.
refpkgContents | Read the contents of a collection of reference sequences ("refpkg").
seqdat | Annotation for the Enterococcus sequence data set.
seqs | Enterococcus sequence data set.
taxonomyFromRefpkg | Extract taxonomic information from a refpkg.
treeDists | Provide objects for determining distances among nodes of a reference tree.