cellHTS2-package	cellHTS2
annotate	annotate
annotate,cellHTS-method	annotate
batch	batch
batch,cellHTS-method	batch
batch<-	batch
batch<-,cellHTS,data.frame-method	batch
bdgpbiomart	bdgpbiomart
Bscore	Bscore
buildCellHTS2	buildCellHTS2
cellHTS	cellHTS-class
cellHTS-class	cellHTS-class
cellHTS2	cellHTS2
channelNames<-	cellHTS-class
channelNames<-,cellHTS,character-method	cellHTS-class
class.cellHTS	cellHTS-class
coerce,chtsImage,data.frame-method	cellHTS-class
compare2cellHTS	cellHTS-class
compare2cellHTS,cellHTS,cellHTS-method	cellHTS-class
configurationAsScreenPlot	configurationAsScreenPlot
configure	configure
configure,cellHTS-method	configure
convertOldCellHTS	convertOldCellHTS
convertWellCoordinates	convertWellCoordinates
Data	Data
Data,cellHTS-method	Data
Data<-	Data
Data<-,cellHTS,array-method	Data
dualCh	data-dualCh
geneAnno	wellAnno
geneAnno,cellHTS-method	wellAnno
getDynamicRange	getDynamicRange
getEnVisionCrosstalkCorrectedData	getEnVisionRawData
getEnVisionRawData	getEnVisionRawData
getMeasureRepAgreement	getMeasureRepAgreement
getSettings	setSettings
getTopTable	getTopTable
getZfactor	getZfactor
gseaModule	gseaModule
imageScreen	imageScreen
initialize,cellHTS-method	cellHTS-class
intensityFiles	intensityFiles
intensityFiles,cellHTS-method	intensityFiles
KcViab	data-KcViab
KcViabSmall	data-KcViabSmall
length,GeneSet-method	gseaModule
lines,ROC-method	ROC
meanSdPlot	cellHTS-class
meanSdPlot,cellHTS-method	cellHTS-class
name	cellHTS-class
name,cellHTS-method	cellHTS-class
name<-	cellHTS-class
name<-,cellHTS,character-method	cellHTS-class
nbatch	cellHTS-class
nbatch,cellHTS-method	cellHTS-class
normalizePlates	normalizePlates
oldKcViabSmall	data-oldKcViabSmall
oneRowPerId	oneRowPerId
pdim	plate
pdim,cellHTS-method	plate
plate	plate
plate,cellHTS-method	plate
plateConf	intensityFiles
plateConf,cellHTS-method	intensityFiles
plateEffects	plateEffects
plateEffects,cellHTS-method	plateEffects
plateList	intensityFiles
plateList,cellHTS-method	intensityFiles
plot,ROC,missing-method	ROC
plotSpatialEffects	plotSpatialEffects
position	plate
position,cellHTS-method	plate
readHTAnalystData	readHTAnalystData
readPlateList	readPlateList
ROC	ROC
ROC,cellHTS-method	ROC
ROC-class	ROC-class
rsa	rsa
scoreReplicates	scoreReplicates
scores2calls	scores2calls
screenDesc	intensityFiles
screenDesc,cellHTS-method	intensityFiles
screenLog	intensityFiles
screenLog,cellHTS-method	intensityFiles
setSettings	setSettings
settings	setSettings
show,cellHTS-method	cellHTS-class
show,ROC-method	ROC-class
spatialNormalization	spatialNormalization
state	state
state,cellHTS-method	state
summarizeChannels	summarizeChannels
summarizeReplicates	summarizeReplicates
templateDescriptionFile	templateDescriptionFile
updateCellHTS	updateCellHTS
well	plate
well,cellHTS-method	plate
wellAnno	wellAnno
wellAnno,cellHTS-method	wellAnno
write.tabdel	write.tabdel
writeReport	writeReport
writeTab	writeTab
writeTab,cellHTS-method	writeTab
