CoverageBrain           Data from Parsons et al. study: Total number of
                        nucleotides "at risk"
EventsBySampleBrain     Data from Parsons et al. study: Mutation types
                        for every gene and sample
GeneSizes08             Data from Parsons et al. study: Sizes and
                        composition of RefSeq genes
ID2name                 Map of gene IDs to gene names
MutationsBrain          Data from Parsons et al. study: Mutation counts
SetMethodsSims-class    Class representation for depositing output from
                        simulations.
cma.scores              Cancer Mutation Prevalence Analysis Scores
combine.sims            Combines two SetMethodSims objects.
do.gene.set.analysis    Implements gene-set analysis methods.
extract.sims.method     Extracts the p-values or q-values from a
                        SetMethodsSims object for a specific method.
sim.data.p.values       Simulates data and performs gene-set analysis
                        methods on the simulated datasets.
