Package: MEDIPS
Type: Package
Title: MeDIP-Seq data analysis
Version: 1.4.0
Date: 2010-09-28
Author: Lukas Chavez, Joern Dietrich
Maintainer: Lukas Chavez <chavez@molgen.mpg.de>
Description: MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-Seq). 
	Nevertheless, functionalities like the quality controls may be applied to other types of sequencing data (e.g. ChIP-Seq). 
	MEDIPS adresses several aspects in the context of MeDIP-Seq data analysis.
License: GPL (>=2)
LazyLoad: yes
biocViews: Sequencing, DNAMethylation, CpGIsland,
        DifferentialExpression, HighThroughputSequencing, ChIPseq,
        Preprocessing, QualityControl, Visualization, Methylseq
Depends: R (>= 2.12.0), BSgenome
Imports: Biostrings, BSgenome, graphics, gtools, IRanges, methods,
        stats, utils
Suggests: BSgenome, BSgenome.Hsapiens.UCSC.hg19
Packaged: 2011-11-01 08:33:06 UTC; biocbuild
Built: R 2.14.0; i386-pc-mingw32; 2011-11-01 12:35:12 UTC; windows
Archs: i386, x64
