Package: GeneRegionScan
Version: 1.10.0
Date: 2009-10-16
Title: GeneRegionScan
Author: Lasse Folkersen, Diego Diez
Maintainer: Lasse Folkersen <lasse.folkersen@ki.se>
Depends: methods, Biobase (>= 2.5.5), Biostrings
Imports: Biobase (>= 2.5.5), affxparser, RColorBrewer, Biostrings
Suggests: BSgenome, affy, AnnotationDbi
LazyLoad: yes
Description: A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.  
License: GPL (>= 2)
biocViews: Microarray, DataImport, SNP, OneChannel, Visualization
Packaged: 2011-11-01 08:08:50 UTC; biocbuild
Built: R 2.14.0; ; 2011-11-01 12:24:51 UTC; windows
