Package: GOSemSim
Type: Package
Title: GO-terms Semantic Similarity Measures
Version: 1.12.1
Author: Guangchuang Yu
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.
Depends: DOSE, R (>= 2.10)
Imports: methods, AnnotationDbi, GO.db, org.Hs.eg.db, org.Ag.eg.db,
        org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db,
        org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db,
        org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db,
        org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Sco.eg.db,
        org.Ss.eg.db, org.Xl.eg.db
Suggests: clusterProfiler
biocViews: GO, Clustering, Pathways, Bioinformatics
Collate: utilities.R zzz.R AllGenerics.R ClassGeneClusterSet.R
        ClassGeneSet.R ClassGOSet.R ClassParams.R oldFunctionCall.R
License: GPL-2
Packaged: 2012-02-04 07:58:08 UTC; biocbuild
Built: R 2.14.1; ; 2012-02-04 12:38:49 UTC; windows
