Package: GGtools
Title: software and data for genetics of gene expression (c) 2006 VJ
        Carey
Version: 4.0.0
Author: Vince Carey <stvjc@channing.harvard.edu>
Description: dealing with hapmap SNP reports, GWAS, etc.
Depends: R (>= 2.13.0), methods, Biobase (>= 1.11.26), GGBase (>=
        3.13.5), snpStats(>= 1.1.10), annotate, IRanges, rtracklayer,
        org.Hs.eg.db, GenomicRanges (>= 1.3.38), ff
Enhances: multicore
Suggests: illuminaHumanv1.db, org.Hs.eg.db,
        SNPlocs.Hsapiens.dbSNP.20100427, rpart, rtracklayer, ceu1kg,
        SNPlocs.Hsapiens.dbSNP.20090506, chopsticks, GGdata, genefilter
LazyData: no
biocViews: SNP, GeneticVariability, Genetics, Bioinformatics
Maintainer: Vince Carey <stvjc@channing.harvard.edu>
Imports: AnnotationDbi, IRanges (>= 1.1.6), annaffy, rtracklayer, bit,
        Rsamtools
License: Artistic-2.0
Collate: allS4.R X2chunk.R cisSnpTests.R geneTrack.R multff.R
        topFeats.R filterCode.R gwSnpScreen.R newEQTL.R topSnps.R
        bestCis.R geneRanges.R minp.R snp130locs.R trackSet.R permEx.R
        vcfutils.R shiftRight.R exome_minp.R scoresInRanges.R
        fullsynth.R clipPCs.R pcc.R interleave2cis.R transTops.R
        feqtltests.R externalize.R egtset.R relocate.R sumDirectors.R
        getTransScores.R transutils.R machutils.R eqtlEstimates.R
        cisFDR.R probeloc.R bindScores.R zzz.R
Packaged: 2011-11-01 07:49:39 UTC; biocbuild
Built: R 2.14.0; ; 2011-11-01 12:27:08 UTC; windows
