# CRImage a package to classify cells and calculate tumour cellularity

## Documentation for package ‘CRImage’ version 1.4.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

CRImage-package | CRImage is a package to analyze images and classify cells.
calculateCellularity | Calculation of tumour cellularity
calculateMeanStdTarget | Calculates Mean and Standard deviation of an image
calculateOtsu | Does Otsu thresholding
classifyCells | A function to classify cells
colorCorrection | Color transfer between images.
convertHSVToRGB | Conversion from HSV color space to RGB color space
convertLABToRGB | Conversion of LAB colour space to RGB colour space
convertRGBToHSV | Conversion from RGB color space to HSV color space
convertRGBToLAB | Converts RGB to LAB color space.
correctCopyNumber | Allelic Copy Number correction for cellularity
createBinaryImage | Thresholding
createClassifier | Construction of a classifier
createTrainingSet | Construction of a training set
CRImage | CRImage is a package to analyze images and classify cells.
plotCorrectedCN | Plot CN profiles corrected for cellularity
processAperio | Cellularity Calculation of Aperio TX Scanner
SauvolaThreshold | Do Sauvola thresholding
segmentImage | Segmentation of an image