# Classification for Biological Sequences

## Documentation for package ‘BioSeqClass’ version 1.12.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

.callPerl | Assistant Functions
.onLoad | Load packages and data
.pathPerl | Assistant Functions
aa.index | Assistant Functions
aaClass | Assistant Functions
aligndisHR | Homolog Reduction
basic | Assistant Functions
cdhitHR | Homolog Reduction
classify | Classification with Specific Features and Cross-Validation
classifyModelBAG | Classification Models
classifyModelCTREE | Classification Models
classifyModelCTREELIBSVM | Classification Models
classifyModelKNN | Classification Models
classifyModelLIBSVM | Classification Models
classifyModelNB | Classification Models
classifyModelNNET | Classification Models
classifyModelRF | Classification Models
classifyModelRPART | Classification Models
classifyModelSVMLIGHT | Classification Models
classifyModelTree | Classification Models
DiProDB | Assistant Functions
distance | Homolog Reduction
dssp.ss | Assistant Functions
elements | Assistant Functions
featureAAindex | Feature Coding by physicochemical/biochemical properties in AAindex
featureACF | Feature Coding by physicochemical/biochemical properties in AAindex
featureACH | Feature Coding by hydrophobicity
featureACI | Feature Coding by physicochemical/biochemical properties in AAindex
featureBDNAVIDEO | Feature Coding by DNA/RNA property
featureBinary | Feature Coding by Binary Vectors
featureCKSAAP | Feature Coding by k-spaced Aminoacids/Base Pairs
featureCTD | Feature Coding by composition, transition and distribution
featureDIPRODB | Feature Coding by Dinucleotide Property
featureDOMAIN | Feature Coding by doamin organization
featureEvaluate | Evaluate Different Feature Coding Schemas
featureFragmentComposition | Feature Coding by the composition of k-mer fragments
featureGapPairComposition | Feature Coding by g-spaced aminoacids/bases pairs
featureHydro | Feature Coding by hydrophobicity
featurePseudoAAComp | Feature Coding by Pseudo Amino Acid Composiion
featurePSSM | Feature Coding
featureSSC | Feature Coding by secondary structure
getDSSP | Feature Coding by secondary structure
getNegSite | Homolog Reduction
getTrain | Homolog Reduction
hr | Homolog Reduction
model | Classification Models
performance | Performance Evaluation
predictPFAM | Feature Coding by doamin organization
predictPROTEUS | Feature Coding by secondary structure
PROPERTY | Assistant Functions
pwm | Assistant Functions
selectFFS | feature forward selection
selectWeka | Feature Selection by Weka
sub.seq | Assistant Functions