# Bayesian Analysis of ChIP-seq Data

## Documentation for package ‘BayesPeak’ version 1.6.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

bayespeak | BayesPeak - Bayesian analysis of ChIP-seq data
identify.overfitdiag | Overfitting diagnostic functions
plot.bed | Plot bed file.
plot.job | Plot the called peaks in a job.
plot.overfitdiag | Overfitting diagnostic functions
plot.PP | Job PP plot.
raw.output | Example raw.output object
raw.output.H3K4me3 | Example raw.output object from H3K4me3 data
read.bed | BayesPeak - Bayesian analysis of ChIP-seq data
region.overfitdiag | Overfitting diagnostic functions
summarise.peaks | Summarize Peaks
summarize.peaks | Summarize Peaks