Package: cn.farms
Title: cn.farms - Factor Analysis for copy number estimation
Version: 1.3.6
Author: Andreas Mitterecker, Djork-Arne Clevert
Maintainer: Andreas Mitterecker <mitterecker@bioinf.jku.at>
Suggests: pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5,
        pd.genomewidesnp.6
License: LGPL (>= 2.0)
Type: Package
Description: This package implements the cn.FARMS algorithm
    for copy number variation (CNV) analysis. cn.FARMS
    allows to analyze the most common Affymetrix (250K-SNP6.0)
    array types, supports high-performance computing using
    snow and ff.
biocViews: Microarray, Bioinformatics, CopyNumberVariants
URL: http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
Date: 2012-01-10
Imports: DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
Depends: R (>= 2.11), Biobase, methods, ff, oligoClasses, snowfall
Collate: 'callSummarize.R' 'combineData.R' 'correctPkgname.R'
        'createAnnotation.R' 'createMatrix.R'
        'determineBaselineArray.R' 'distributionDistance.R'
        'dnaCopySf.R' 'doCnFarms.R' 'fragLengthCorr.R' 'normAdd.R'
        'normalizeAverage.R' 'normalizeCels.R' 'normalizeNpData.R'
        'normalizeQuantiles.R' 'normalizeSor.R' 'plotDendrogram.R'
        'plotDensity.R' 'plotEvalIc.R' 'plotSmoothScatter.R'
        'plotsRegions.R' 'plotViolines.R' 'sparseFarmsC.R'
        'summarizationMl.R' 'summarizationSl.R'
        'summarizeFarmsGaussian.R' 'summarizeFarmsLaplaceExact.R'
        'summarizeFarmsLaplaceVar.R' 'summarizeFarmsMethods.R'
        'summarizeStatistics.R' 'windowFunctions.R' 'windowMethods.R'
        'normalizeProbeSequence.R' 'summarizeFarmsLaplaceExact2.R'
        'summarizeFarmsLaplaceExact3.R' 'normalizeNone.R' 'utils-lds.R'
        'vanillaIce.R' 'zzz.R'
Packaged: 2012-05-17 17:44:16 UTC; biocbuild
Built: R 2.14.2; universal-apple-darwin9.8.0; 2012-05-17 17:55:20 UTC; unix
Archs: i386, ppc, x86_64
