RedeR-package	RedeR-package
addEdgeBetweenContainers	addEdgeBetweenContainers
addEdgeBetweenContainers,RedPort-method	addEdgeBetweenContainers
addEdges	addEdges
addEdges,RedPort-method	addEdges
addGraph	addGraph
addGraph,RedPort-method	addGraph
addLegend.color	addLegend
addLegend.color,RedPort-method	addLegend
addLegend.shape	addLegend
addLegend.shape,RedPort-method	addLegend
addLegend.size	addLegend
addLegend.size,RedPort-method	addLegend
addNodes	addNodes
addNodes,RedPort-method	addNodes
addSeries	addSeries
addSeries,RedPort-method	addSeries
addSubgraph	addSubgraph
addSubgraph,RedPort-method	addSubgraph
addSubgraph.list	addSubgraph.list
addSubgraph.list,RedPort-method	addSubgraph.list
att.mape	att
att.mapv	att
att.sete	att
att.setv	att
calld	calld
calld,RedPort-method	calld
Carroll2006	RedeR.data
cea	cea
deleteEdges	deleteEdges
deleteEdges,RedPort-method	deleteEdges
deleteNodes	deleteNodes
deleteNodes,RedPort-method	deleteNodes
deletePlugin	deletePlugin
deletePlugin,RedPort-method	deletePlugin
deleteSelectedEdges	deleteSelectedEdges
deleteSelectedEdges,RedPort-method	deleteSelectedEdges
deleteSelectedNodes	deleteSelectedNodes
deleteSelectedNodes,RedPort-method	deleteSelectedNodes
deSelectEdges	deSelectEdges
deSelectEdges,RedPort-method	deSelectEdges
deSelectGraph	deSelectGraph
deSelectGraph,RedPort-method	deSelectGraph
deSelectNodes	deSelectNodes
deSelectNodes,RedPort-method	deSelectNodes
duplicateGraph	duplicateGraph
duplicateGraph,RedPort-method	duplicateGraph
dynwin	dynwin
dynwin,RedPort-method	dynwin
ER.deg	RedeR.data
ER.limma	RedeR.data
exitd	exitd
exitd,RedPort-method	exitd
getArrowDirection	getArrowDirection
getArrowDirection,RedPort-method	getArrowDirection
getContainerComponets	getContainerComponets
getContainerComponets,RedPort-method	getContainerComponets
getEdgeColor	getEdgeColor
getEdgeColor,RedPort-method	getEdgeColor
getEdgeIDs	getEdgeIDs
getEdgeIDs,RedPort-method	getEdgeIDs
getEdges	getEdges
getEdges,RedPort-method	getEdges
getEdgeType	getEdgeType
getEdgeType,RedPort-method	getEdgeType
getEdgeWeight	getEdgeWeight
getEdgeWeight,RedPort-method	getEdgeWeight
getEdgeWidth	getEdgeWidth
getEdgeWidth,RedPort-method	getEdgeWidth
getGraph	getGraph
getGraph,RedPort-method	getGraph
getNodeAliases	getNodeAliases
getNodeAliases,RedPort-method	getNodeAliases
getNodeBend	getNodeBend
getNodeBend,RedPort-method	getNodeBend
getNodeColor	getNodeColor
getNodeColor,RedPort-method	getNodeColor
getNodeFontColor	getNodeFontColor
getNodeFontColor,RedPort-method	getNodeFontColor
getNodeFontName	getNodeFontName
getNodeFontName,RedPort-method	getNodeFontName
getNodeFontSize	getNodeFontSize
getNodeFontSize,RedPort-method	getNodeFontSize
getNodeFontStyle	getNodeFontStyle
getNodeFontStyle,RedPort-method	getNodeFontStyle
getNodeFontX	getNodeFontX
getNodeFontX,RedPort-method	getNodeFontX
getNodeFontY	getNodeFontY
getNodeFontY,RedPort-method	getNodeFontY
getNodeH	getNodeH
getNodeH,RedPort-method	getNodeH
getNodeIDs	getNodeIDs
getNodeIDs,RedPort-method	getNodeIDs
getNodeLineColor	getNodeLineColor
getNodeLineColor,RedPort-method	getNodeLineColor
getNodeLineWidth	getNodeLineWidth
getNodeLineWidth,RedPort-method	getNodeLineWidth
getNodes	getNodes
getNodes,RedPort-method	getNodes
getNodeShape	getNodeShape
getNodeShape,RedPort-method	getNodeShape
getNodeSize	getNodeSize
getNodeSize,RedPort-method	getNodeSize
getNodeW	getNodeW
getNodeW,RedPort-method	getNodeW
getNodeWeight	getNodeWeight
getNodeWeight,RedPort-method	getNodeWeight
getNodeX	getNodeX
getNodeX,RedPort-method	getNodeX
getNodeY	getNodeY
getNodeY,RedPort-method	getNodeY
getSourceEdgeIDs	getSourceEdgeIDs
getSourceEdgeIDs,RedPort-method	getSourceEdgeIDs
getSourceEdges	getSourceEdges
getSourceEdges,RedPort-method	getSourceEdges
getTargetEdgeIDs	getTargetEdgeIDs
getTargetEdgeIDs,RedPort-method	getTargetEdgeIDs
getTargetEdges	getTargetEdges
getTargetEdges,RedPort-method	getTargetEdges
gtoy.rm	gtoy.rm
hs.inter	RedeR.data
isDynamicsActive	isDynamicsActive
isDynamicsActive,RedPort-method	isDynamicsActive
mergeNodes	mergeNodes
mergeNodes,RedPort-method	mergeNodes
mergeOutEdges	mergeOutEdges
mergeOutEdges,RedPort-method	mergeOutEdges
nesthc	nesthc
nesthc,RedPort-method	nesthc
nestNodes	nestNodes
nestNodes,RedPort-method	nestNodes
ping	ping
ping,RedPort-method	ping
PluginBuilder	PluginBuilder
PluginBuilder-class	PluginBuilder-class
pluginParser	pluginParser
RedeR	RedeR-package
rederexpresspost	rederpost
rederpost	rederpost
RedPort	RedPort
RedPort-class	RedPort-class
relax	relax
relax,RedPort-method	relax
resetd	resetd
resetd,RedPort-method	resetd
selectAllEdges	selectAllEdges
selectAllEdges,RedPort-method	selectAllEdges
selectAllNodes	selectAllNodes
selectAllNodes,RedPort-method	selectAllNodes
selectEdges	selectEdges
selectEdges,RedPort-method	selectEdges
selectGraph	selectGraph
selectGraph,RedPort-method	selectGraph
selectNodes	selectNodes
selectNodes,RedPort-method	selectNodes
setArrowDirection	setArrowDirection
setArrowDirection,RedPort-method	setArrowDirection
setEdgeColor	setEdgeColor
setEdgeColor,RedPort-method	setEdgeColor
setEdgeType	setEdgeType
setEdgeType,RedPort-method	setEdgeType
setEdgeWeight	setEdgeWeight
setEdgeWeight,RedPort-method	setEdgeWeight
setEdgeWidth	setEdgeWidth
setEdgeWidth,RedPort-method	setEdgeWidth
setNodeAlias	setNodeAliases
setNodeAlias,RedPort-method	setNodeAliases
setNodeBend	setNodeBend
setNodeBend,RedPort-method	setNodeBend
setNodeColor	setNodeColor
setNodeColor,RedPort-method	setNodeColor
setNodeFontColor	setNodeFontColor
setNodeFontColor,RedPort-method	setNodeFontColor
setNodeFontName	setNodeFontName
setNodeFontName,RedPort-method	setNodeFontName
setNodeFontSize	setNodeFontSize
setNodeFontSize,RedPort-method	setNodeFontSize
setNodeFontStyle	setNodeFontStyle
setNodeFontStyle,RedPort-method	setNodeFontStyle
setNodeFontXY	setNodeFontXY
setNodeFontXY,RedPort-method	setNodeFontXY
setNodeLineColor	setNodeLineColor
setNodeLineColor,RedPort-method	setNodeLineColor
setNodeLineWidth	setNodeLineWidth
setNodeLineWidth,RedPort-method	setNodeLineWidth
setNodeShape	setNodeShape
setNodeShape,RedPort-method	setNodeShape
setNodeSize	setNodeSize
setNodeSize,RedPort-method	setNodeSize
setNodeWeight	setNodeWeight
setNodeWeight,RedPort-method	setNodeWeight
setNodeXY	setNodeXY
setNodeXY,RedPort-method	setNodeXY
subg	subg
submitPlugin	submitPlugin
submitPlugin,RedPort-method	submitPlugin
updateContainerSize	updateContainerSize
updateContainerSize,RedPort-method	updateContainerSize
updateGraph	updateGraph
updateGraph,RedPort-method	updateGraph
updatePlugins	updatePlugins
updatePlugins,RedPort-method	updatePlugins
version	version
version,RedPort-method	version
