Package: RedeR
Type: Package
Title: Bridging the gap between hierarchical network representation and
        functional analysis.
Version: 1.0.14
Date: 2012-03-15
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Depends: R (>= 2.12.0), igraph(>= 0.5.5), RCurl(>= 1.6-0), XML (>=
        3.4-0), XMLRPC (>= 0.2.2)
Imports: rJava, methods
Suggests: PANR, HTSanalyzeR, pvclust, graph
biocViews: GraphsAndNetworks, Visualization, GUI
Description: RedeR is an R-based package combined with a stand-alone Java application for dynamic network visualization and manipulation. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization: for R Developers, it allows the development of Java plug-ins exclusively using R codes; for Java Users, it runs R methods implemented in a stand-alone application, and for R Users RedeR interactively displays R graphs using a robust Java graphic engine embedded in this package.
License: GPL (>= 2)
URL: http://www.markowetzlab.org/software/networks.html
LazyLoad: yes
Packaged: 2012-03-21 05:25:59 UTC; biocbuild
Built: R 2.14.2; ; 2012-03-21 12:32:06 UTC; unix
