Package: sagenhaft
Version: 1.22.0
Date: 2007-04-10
Title: Collection of functions for reading and comparing SAGE libraries
Author: Tim Beissbarth <beissbarth@wehi.edu.au>, with contributions
        from Gordon Smyth <smyth@wehi.edu.au> and Lavinia Hyde
        <hyde@wehi.edu.au>.
Reference: Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS,
        Scott HS, Speed TP: Statistical modeling of sequencing errors
        in SAGE libraries, Bioinformatics, 2004 20(Suppl. 1):i31-9.
Maintainer: Tim Beissbarth <beissbarth@wehi.edu.au>
Depends: R (>= 2.10), SparseM (>= 0.73), methods
Imports: graphics, methods, SparseM, stats, utils
Description: This package implements several functions useful for
        analysis of gene expression data by sequencing tags as done in
        SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction
        of a SAGE library from sequence files, sequence error
        correction, library comparison. Sequencing error correction is
        implementing using an Expectation Maximization Algorithm based
        on a Mixture Model of tag counts.
biocViews: SAGE
License: GPL (>= 2)
URL: http://tagcalling.mbgproject.org
Packaged: 2011-04-14 08:34:54 UTC; biocbuild
Built: R 2.13.0; ; 2011-04-14 15:34:51 UTC; windows
