Package: oligo
Version: 1.16.2
Title: Preprocessing tools for oligonucleotide arrays.
Author: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk>, Rafael A.
        Irizarry with contributions from Ben Bolstad, Vince Carey,
        Robert Gentleman, Wolfgang Huber
Maintainer: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk>
Depends: R (>= 2.13.0), oligoClasses (>= 1.13.9), preprocessCore (>=
        1.13.5)
Imports: affyio (>= 1.19.4), affxparser (>= 1.23.1), Biobase (>=
        2.11.8), Biostrings, DBI (>= 0.2-5), ff, graphics, methods,
        splines, stats, utils
Enhances: ff, snow
LinkingTo: preprocessCore
Suggests: hapmap100kxba, pd.mapping50k.xba240, pd.huex.1.0.st.v2,
        pd.hg18.60mer.expr, maqcExpression4plex, genefilter, limma,
        RColorBrewer, oligoData
Description: A package to analyze oligonucleotide arrays
        (expression/SNP/tiling/exon) at probe-level. It currently
        supports Affymetrix (CEL files) and NimbleGen arrays (XYS
        files).
License: LGPL (>= 2)
Collate: AllGenerics.R methods-GeneFeatureSet.R
        methods-ExonFeatureSet.R methods-ExpressionFeatureSet.R
        methods-ExpressionSet.R methods-LDS.R methods-FeatureSet.R
        methods-SnpFeatureSet.R methods-SnpCnvFeatureSet.R
        methods-TilingFeatureSet.R methods-DBPDInfo.R
        methods-background.R methods-normalization.R
        methods-summarization.R read.celfiles.R read.xysfiles.R
        utils-general.R todo-snp.R functions-crlmm.R functions-snprma.R
        justSNPRMA.R justCRLMM.R methods-snp6.R methods-genotype.R
        PLM_internal.R fitPLM.R methods-PLMset.R zzz.R
LazyLoad: Yes
biocViews: Microarray, OneChannel, TwoChannel, Preprocessing, SNP,
        DifferentialExpression, DNAMethylation, ExonArray,
        GeneExpression, Bioinformatics, DataImport, Transcription,
        ChIPchip, CopyNumberVariants, CpGIsland
Packaged: 2011-09-26 17:11:01 UTC; biocbuild
Built: R 2.13.1; i386-pc-mingw32; 2011-09-26 23:16:57 UTC; windows
Archs: i386, x64
