Package: lumi
Type: Package
Title: BeadArray Specific Methods for Illumina Methylation and
        Expression Microarrays
Version: 2.4.0
Date: 2011-01-22
Depends: R (>= 2.4.0), Biobase (>= 2.5.5), nleqslv
Imports: affy (>= 1.23.4), methylumi, annotate, Biobase (>= 2.5.5),
        mgcv (>= 1.4-0), hdrcde, KernSmooth, preprocessCore, RSQLite,
        DBI, AnnotationDbi, MASS, graphics, stats, methods
Suggests: beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db,
        lumiHumanIDMapping, genefilter, RColorBrewer
Author: Pan Du, Gang Feng, Warren Kibbe, Simon Lin
Maintainer: Pan Du <dupan@northwestern.edu>
Description: The lumi package provides an integrated solution for the
        Illumina microarray data analysis. It includes functions of
        Illumina BeadStudio (GenomeStudio) data input, quality control,
        BeadArray-specific variance stabilization, normalization and
        gene annotation at the probe level. It also includes the
        functions of processing Illumina methylation microarrays,
        especially Illumina Infinium methylation microarrays.
License: LGPL (>= 2)
LazyLoad: yes
biocViews: Microarray, OneChannel, Preprocessing, DNAMethylation,
        QualityControl, TwoChannel
Packaged: 2011-04-14 09:00:45 UTC; biocbuild
Built: R 2.13.0; ; 2011-04-14 15:24:03 UTC; windows
