Package: cn.farms
Title: cn.farms - Factor Analysis for copy number estimation
Version: 1.1.12
Maintainer: Andreas Mitterecker <mitterecker@bioinf.jku.at>, Djork-Arne
        Clevert <okko@clevert.de>
License: LGPL (>= 2.0)
Type: Package
LazyLoad: Yes
Author: Andreas Mitterecker <mitterecker@bioinf.jku.at>, Djork-Arne
        Clevert <okko@clevert.de>
Description: This package implements the cn.FARMS algorithm for copy
        number variation (CNV) analysis. cn.FARMS allows to analyze all
        existing Affymetrix (10K-SNP6.0) array types, supports
        high-performance computing using snow and ff.
biocViews: Microarray, Bioinformatics, CopyNumberVariants
URL: http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
Date: 2011-08-05
Imports: DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
Depends: R (>= 2.11), Biobase, methods, ff, oligoClasses, snowfall
Suggests: pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5,
        pd.genomewidesnp.6
Collate: callSummarize.R combineData.R correctPkgname.R
        createAnnotation.R createMatrix.R determineBaselineArray.R
        distributionDistance.R dnaCopySf.R doCnFarms.R fragLengthCorr.R
        normAdd.R normalizeAverage.R normalizeCels.R normalizeNpData.R
        normalizeQuantiles.R normalizeSor.R plotDendrogram.R
        plotDensity.R plotEvalIc.R plotSmoothScatter.R plotsRegions.R
        plotViolines.R sparseFarmsC.R summarizationMl.R
        summarizationSl.R summarizeFarmsGaussian.R
        summarizeFarmsLaplaceExact.R summarizeFarmsLaplaceVar.R
        summarizeFarmsMethods.R summarizeStatistics.R windowFunctions.R
        windowMethods.R zzz.R
Packaged: 2011-08-08 23:46:25 UTC; biocbuild
Built: R 2.13.1; i386-pc-mingw32; 2011-08-09 04:31:42 UTC; windows
Archs: i386, x64
