Package: GenomicFeatures
Title: Tools for making and manipulating transcript centric annotations
Version: 1.4.5
Author: M. Carlson, H. Pages, P. Aboyoun, S. Falcon, M. Morgan, D.
        Sarkar, M. Lawrence
License: Artistic-2.0
Description: A set of tools and methods for making and manipulating
        transcript centric annotations. With these tools the user can
        easily download the genomic locations of the transcripts, exons
        and cds of a given organism, from either the UCSC Genome
        Browser or a BioMart database (more sources will be supported
        in the future). This information is then stored in a local
        database that keeps track of the relationship between
        transcripts, exons, cds and genes. Flexible methods are
        provided for extracting the desired features in a convenient
        format.
Maintainer: Biocore Team c/o BioC user list
        <bioconductor@stat.math.ethz.ch>
Depends: IRanges (>= 1.7.7), GenomicRanges (>= 1.3.23)
Imports: methods, DBI (>= 0.2-5), RSQLite (>= 0.8-1), IRanges,
        GenomicRanges, Biostrings (>= 2.17.6), rtracklayer (>= 1.7.11),
        biomaRt, RCurl, utils
Suggests: rtracklayer, biomaRt, org.Mm.eg.db, Biostrings, BSgenome,
        BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14),
        BSgenome.Celegans.UCSC.ce2, RUnit
Collate: AllClasses.R AllGenerics.R utils.R TranscriptDb-class.R
        FeatureDb-class.R makeTranscriptDb.R makeTranscriptDbFromUCSC.R
        makeTranscriptDbFromBiomart.R makeFeatureDbFromUCSC.R
        transcripts.R transcriptsByOverlaps.R transcriptsBy.R regions.R
        features.R extractTranscriptsFromGenome.R
        test_GenomicFeatures_package.R
biocViews: Genetics, Infrastructure, Annotation,
        HighThroughputSequencing
Packaged: 2011-10-12 20:12:01 UTC; biocbuild
Built: R 2.13.2; ; 2011-10-13 01:51:57 UTC; windows
