AggregateMC             Aggregation of repeated rankings using a Markov
                        chain approach
AggregatePenalty        Aggregation of repeated rankings using a
                        variance penalty approach
AggregateSVD            Agregation of repeated rankings using the
                        singular value decomposition (SVD)
AggregateSimple         Simple aggregation of repeated rankings
AggregatedRanking-class
                        "AggregatedRanking"
BootMatrix-class        "BootMatrix"
FoldMatrix-class        "FoldMatrix"
GeneRanking-class       "GeneRanking"
GeneSelector            Select promising candidate genes
GeneSelector-package    Stability and aggregation of ranked gene lists
GeneSelectorOutput-class
                        "GeneSelectorOutputRanking"
GenerateBootMatrix      Altered datasets via bootstrap
GenerateFoldMatrix      Altered datasets via k-Jackknife or label
                        exchange
GetStabilityDistance    Stability measures for gene rankings
GetStabilityOverlap     Stability measures for gene lists
GetStabilityUnion       Stability measures for gene lists
HeatmapRankings         Heatmap of genes and rankings
MergeMethods            Merge rankings obtained from different ranking
                        procedures
RankingBaldiLong        Ranking based on the t-statistic of Baldi and
                        Long
RankingEbam             Ranking based on the empirical Bayes approach
                        of Efron et al. (2001)
RankingFC               Ranking based on the (log) foldchange
RankingFoxDimmic        Ranking based on the t-statistic of Fox and
                        Dimmic
RankingLimma            Ranking based on the 'moderated' t statistic
RankingPermutation      Ranking based on permutation tests.
RankingSam              Ranking based on the SAM statistic
RankingShrinkageT       Ranking based on the 'shrinkage t' statistic
RankingSoftthresholdT   Ranking via the 'soft-threshold' t-statistic
RankingTstat            Ranking based on the 'ordinary' t statistic.
RankingWelchT           Ranking based on the Welch t statistic.
RankingWilcEbam         Ranking based on the empirical bayes approach
                        of Efron
RankingWilcoxon         Ranking based on the Wilcoxon statistic
RepeatRanking           Repeat the ranking procedure for altered data
                        sets
RepeatedRanking-class   "RepeatedRanking"
StabilityDistance-class
                        "StabilityDistance"
StabilityOverlap-class
                        "StabilityOverlap"
StabilityUnion-class    "StabilityUnion"
combn                   Internal functions
dispersion,RepeatedRanking-method
                        Compute genewise dispersion measures for
                        repeated rankings
samplingcontrol         Control function
toplist-methods         'Toplist' methods
toydata                 Simulated gene expression dataset.
