GOSemSim-package	GOSemSim-package
clusterSim	clusterSim
computeIC	Params-class
computeIC,Params-method	Params-class
GeneClusterSet-class	GeneClusterSet-class
GeneSet-class	GeneSet-class
geneSim	geneSim
GOSemSim	GOSemSim-package
GOSet	GOSet-methods
GOSet-class	GOSet-class
GOSet-methods	GOSet-methods
goSim	goSim
IC	IC
Info_Contents_anopheles_BP	IC
Info_Contents_anopheles_CC	IC
Info_Contents_anopheles_MF	IC
Info_Contents_arabidopsis_BP	IC
Info_Contents_arabidopsis_CC	IC
Info_Contents_arabidopsis_MF	IC
Info_Contents_bovine_BP	IC
Info_Contents_bovine_CC	IC
Info_Contents_bovine_MF	IC
Info_Contents_canine_BP	IC
Info_Contents_canine_CC	IC
Info_Contents_canine_MF	IC
Info_Contents_chicken_BP	IC
Info_Contents_chicken_CC	IC
Info_Contents_chicken_MF	IC
Info_Contents_chimp_BP	IC
Info_Contents_chimp_CC	IC
Info_Contents_chimp_MF	IC
Info_Contents_coelicolor_BP	IC
Info_Contents_coelicolor_CC	IC
Info_Contents_coelicolor_MF	IC
Info_Contents_ecolik12_BP	IC
Info_Contents_ecolik12_CC	IC
Info_Contents_ecolik12_MF	IC
Info_Contents_ecsakai_BP	IC
Info_Contents_ecsakai_CC	IC
Info_Contents_ecsakai_MF	IC
Info_Contents_fly_BP	IC
Info_Contents_fly_CC	IC
Info_Contents_fly_MF	IC
Info_Contents_human_BP	IC
Info_Contents_human_CC	IC
Info_Contents_human_MF	IC
Info_Contents_malaria_BP	IC
Info_Contents_malaria_CC	IC
Info_Contents_malaria_MF	IC
Info_Contents_mouse_BP	IC
Info_Contents_mouse_CC	IC
Info_Contents_mouse_MF	IC
Info_Contents_pig_BP	IC
Info_Contents_pig_CC	IC
Info_Contents_pig_MF	IC
Info_Contents_rat_BP	IC
Info_Contents_rat_CC	IC
Info_Contents_rat_MF	IC
Info_Contents_rhesus_BP	IC
Info_Contents_rhesus_CC	IC
Info_Contents_rhesus_MF	IC
Info_Contents_worm_BP	IC
Info_Contents_worm_CC	IC
Info_Contents_worm_MF	IC
Info_Contents_xenopus_BP	IC
Info_Contents_xenopus_CC	IC
Info_Contents_xenopus_MF	IC
Info_Contents_yeast_BP	IC
Info_Contents_yeast_CC	IC
Info_Contents_yeast_MF	IC
Info_Contents_zebrafish_BP	IC
Info_Contents_zebrafish_CC	IC
Info_Contents_zebrafish_MF	IC
loadAnnoPkg	Params-class
loadAnnoPkg,Params-method	Params-class
loadGOMap	Params-class
loadGOMap,Params-method	Params-class
loadICdata	Params-class
loadICdata,Params-method	Params-class
mclusterSim	mclusterSim
mgeneSim	mgeneSim
mgoSim	mgoSim
Params	Params-methods
Params-class	Params-class
Params-methods	Params-methods
setCombineMethod<-	Params-class
setCombineMethod<-,Params-method	Params-class
setMethod<-	Params-class
setMethod<-,Params-method	Params-class
setOntology<-	Params-class
setOntology<-,Params-method	Params-class
setOrganism<-	Params-class
setOrganism<-,Params-method	Params-class
sim	sim-methods
sim,GeneClusterSet-method	sim-methods
sim,GeneSet-method	sim-methods
sim,GOSet-method	sim-methods
sim-methods	sim-methods
[,Params,character-method	Params-class
