# Illumina Rat Expression BeadChips (include version: version 1) annotation data (chip lumiRatAll)

## Documentation for package ‘lumiRatAll.db’ version 1.12.0

- DESCRIPTION file.

## Help Pages

lumiRatAll | Bioconductor annotation data package
lumiRatAll.db | Bioconductor annotation data package
lumiRatAllACCNUM | Map Manufacturer identifiers to Accession Numbers
lumiRatAllALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
lumiRatAllCHR | Map Manufacturer IDs to Chromosomes
lumiRatAllCHRLENGTHS | A named vector for the length of each of the chromosomes
lumiRatAllCHRLOC | Map Manufacturer IDs to Chromosomal Location
lumiRatAllCHRLOCEND | Map Manufacturer IDs to Chromosomal Location
lumiRatAllENSEMBL | Map Ensembl gene accession numbers with Entrez Gene identifiers
lumiRatAllENSEMBL2PROBE | Map Ensembl gene accession numbers with Entrez Gene identifiers
lumiRatAllENTREZID | Map between Manufacturer Identifiers and Entrez Gene
lumiRatAllENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
lumiRatAllENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers
lumiRatAllGENENAME | Map between Manufacturer IDs and Genes
lumiRatAllGO | Map between Manufacturer IDs and Gene Ontology (GO)
lumiRatAllGO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
lumiRatAllGO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers
lumiRatAllLOCUSID | Map between Manufacturer Identifiers and Entrez Gene
lumiRatAllMAP | Map between Manufacturer Identifiers and cytogenetic maps/bands
lumiRatAllMAPCOUNTS | Number of mapped keys for the maps in package lumiRatAll.db
lumiRatAllORGANISM | The Organism information for lumiRatAll
lumiRatAllORGPKG | The Organism information for lumiRatAll
lumiRatAllPATH | Mappings between probe identifiers and KEGG pathway identifiers
lumiRatAllPATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
lumiRatAllPFAM | Map Manufacturer IDs to Pfam IDs
lumiRatAllPMID | Map between Manufacturer Identifiers and PubMed Identifiers
lumiRatAllPMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers
lumiRatAllPROSITE | Map Manufacturer IDs to PROSITE ID
lumiRatAllREFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers
lumiRatAllSYMBOL | Map between Manufacturer Identifiers and Gene Symbols
lumiRatAllUNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers
lumiRatAllUNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers
lumiRatAllUNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers
lumiRatAll_dbconn | Collect information about the package annotation DB
lumiRatAll_dbfile | Collect information about the package annotation DB
lumiRatAll_dbInfo | Collect information about the package annotation DB
lumiRatAll_dbschema | Collect information about the package annotation DB