APComEX                 An example of an ISI using apComplex on simEX
PPIEX                   Protein-protein co-membership graph matrix
TSNMatrix               ISI
applyDeformationError   Function that handles deformed bait proteins
applyFNErrors           Function that generates stochastic False
                        Negative Errors
applyFPErrors           Function to generate the False Postive
                        Observations
applyStickyError        Function that takes sticky proteins and
                        calculates FP's
compIndep               This function determines probability
                        distribution independence between
filteredProt            A data file containing unusable proteins
fullSimEX               In Silico Interactome
missedProtEX            Vector of Protein not recorded in simEX
missedProtHMSPCI        The proteins not recorded by the ISI TSNMatrix
recordSticky            This function records proteins known to be
                        sticky in the simulation of
runAPComplex            A function that calls the complex estimation
                        function, apComplex on the
runCompIndep            Function checks the arguments and parameters
                        for compIndep.
runSimEX                The output of the simulation with fullSimEX as
                        the input
runSimulators           Function that sets up the ISI et al to run the
                        simulations
simEX                   An example ISI
simulator               Function sets up inputs to call all FN/FP
                        errors on the PPCM
simulatorD              Function that simulates deformation errors
simulatorS              Function that calculates the FP sticky errors
vBaits                  The baits used in HMSPCI
vBaitsEX                Example Vector of Baits
vDeformEX               Doformed Protein
vDeformed               A deformed protein
vDeformedEX             Example vector of deformed baits
vStickyEX               Sticky Proteins
