Methods for identifying small RNA loci from high-throughput sequencing data

Documentation for package ‘segmentSeq’ version 1.2.0

segmentSeq-package	Segmentation of the genome based on multiple samples of high-throughput
alignmentData	Class "alignmentData"
alignmentData-class	Class "alignmentData"
dim-method	Class "alignmentData"
dim-method	Class "segData"
filterSegments	Filters an set of segments (given an ordering on the segments) such
getCounts	Gets counts from alignment data from a set of genome segments.
getPriors	Finds a set of priors for a 'segData' object.
initialize-method	Class "alignmentData"
initialize-method	Class "segData"
plotGenome	Plots the alignment of sequence tags on the genome given an
processAD	Processes an 'alignmentData' object into a 'segData' object for
processTags	Convenience function for processing tab-delimited files in a certain
segData-class	Class "segData"
segmentSeq	Segmentation of the genome based on multiple samples of high-throughput
show-method	Class "alignmentData"
show-method	Class "segData"
similaritySeg	Takes the 'segData' object and uses it to define segments on the
SL10	Example data selected from a set of Illumina sequencing experiments.
SL26	Example data selected from a set of Illumina sequencing experiments.
SL32	Example data selected from a set of Illumina sequencing experiments.
SL9	Example data selected from a set of Illumina sequencing experiments.
[-method	Class "alignmentData"
[-method	Class "segData"