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A B C D E F G I J K L M P R S V W X misc
| "addParameter-methods" | Add a column data variable to the data of a FCS object |
| "addParameter-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "checkvars-methods" | Checks the ranges, dimensions, and names of the metadata based on the |
| "checkvars-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "coerce-methods" | Coercing an object class to another class |
| "coerce-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "dim.FCS-methods" | Obtaining the dimensions of the data of an "FCS-class" object |
| "dim.FCS-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "equals-methods" | Checks equality of two "FCS-class" objects |
| "equals-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "FCS" | Class "FCS" : Flow Cytometry Standard |
| "FCS-class" | Class "FCS" : Flow Cytometry Standard |
| "FCSgate" | Class "FCSgate" Flow Cytometry Standard extension to gating |
| "FCSgate-class" | Class "FCSgate" Flow Cytometry Standard extension to gating |
| "FCSggobi" | Class "FCSggobi" : Dynamic Plots |
| "FCSggobi-class" | Class "FCSggobi" : Dynamic Plots |
| "FCSmetadata" | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "FCSmetadata-class" | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "FCSsummary-class" | Class "FCSsummary" Summary object for a "FCS-class" |
| "fixvars-methods" | Checks and fixes the ranges, dimensions, and names of the metadata |
| "fixvars-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "fluors-methods" | Obtaining the Data of Fluorescence Measurements from a FCS object |
| "fluors-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "ggobi-methods" | Dynamic Plotting and Viewing the "FCS" object data high-dimensionally |
| "ggobi-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "metaData-methods" | Extraction of the FCSmetadata-class object from a FCS-class object |
| "metaData-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "plot-methods" | Graphical representation of an object |
| "plot-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "print-methods" | Printing an object |
| "print-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "print-methods"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "print-methods"-method | Class "FCSsummary" Summary object for a "FCS-class" |
| "show-methods" | Showing an object |
| "show-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "show-methods"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "show-methods"-method | Class "FCSsummary" Summary object for a "FCS-class" |
| "summary-methods" | Summary of object |
| "summary-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "summary-methods"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "[" | Extraction of slot information using "[" |
| "["-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "["-method | Extraction of slot information using "[" |
| "["-methods | Extraction of slot information using "[" |
| "[-methods" | Extraction of slot information using "[" |
| "[-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "[-methods"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "[<-" | Replacement and/or Addition of new slot or indexed elements using "[<-" |
| "[<-"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "[<-"-methods | Replacement and/or Addition of new slot or indexed elements using "[<-" |
| "[<--methods" | Replacement and/or Addition of new slot or indexed elements using "[<-" |
| "[<--methods"-method | Class "FCS" : Flow Cytometry Standard |
| "[<--methods"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "[[" | Extraction of slot information using "[[" |
| "[[",ANY-methods | Extraction of slot information using "[[" |
| "[["-method | Extraction of slot information using "[[" |
| "[[-methods" | Extraction of slot information using "[[" |
| "[[-methods"-method | Class "FCS" : Flow Cytometry Standard |
| "[[-methods"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "[[<-" | Replacement and/or Addition of new slot or indexed elements using |
| "[[<-"-methods | Replacement and/or Addition of new slot or indexed elements using |
| "[[<-"-methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| "[[<--methods" | Replacement and/or Addition of new slot or indexed elements using |
| "[[<--methods"-method | Class "FCS" : Flow Cytometry Standard |
| "[[<--methods"-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| add.parallel.coordinates | Add a parallel coordinates line to an existing plot |
| add.parallelCoordinates | Add a parallel coordinates line to an existing plot |
| addParameter | Add a column data variable to the data of a FCS object |
| addParameter-method | Class "FCS" : Flow Cytometry Standard |
| addParameter-methods | Add a column data variable to the data of a FCS object |
| boxplot.FCS | Create boxplots one parameter of one (or more) FCS object(s) |
| breakpoints.ProbBin | Obtain break points for Probability binning |
| checkvars | Checks the ranges, dimensions, and names of the metadata based on the |
| checkvars-method | Class "FCS" : Flow Cytometry Standard |
| checkvars-methods | Checks the ranges, dimensions, and names of the metadata based on the |
| coerce-method | Class "FCS" : Flow Cytometry Standard |
| coerce-method | Convert Data Objects |
| coerce-method | Coercing an object class to another class |
| coerce-methods | Coercing an object class to another class |
| colnames-method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| colnames<--method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| ContourScatterPlot | Image and Contour Bivariate Plot |
| convertS3toS4 | Converts S3 class FCS object to S4 class FCS object |
| createGate | Gating of a FCS object: Making a Gating/Selection index column for |
| cytoSet-class | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| densityplot.FCS | Create density plots one parameter of one (or more) FCS object(s) |
| dim.FCS | Obtaining the dimensions of the data of an "FCS-class" object |
| dim.FCS-method | Class "FCS" : Flow Cytometry Standard |
| dim.FCS-method | Obtaining the dimensions of the data of an "FCS-class" object |
| dim.FCS-methods | Obtaining the dimensions of the data of an "FCS-class" object |
| emp.f | Create a guassian kernel density |
| equals | Checks equality of two "FCS-class" objects |
| equals-method | Class "FCS" : Flow Cytometry Standard |
| equals-methods | Checks equality of two "FCS-class" objects |
| extractGatedData | Extract the data of a FCS object using a specified Gating Index |
| extractGateHistory | Extracting the gating information from the history |
| FCS | Class "FCS" : Flow Cytometry Standard |
| FCS-class | Class "FCS" : Flow Cytometry Standard |
| FCS.type | Objects providing parameters for the raw FCS file types |
| fcs.type | Objects providing parameters for the raw FCS file types |
| fcs.type.cellquest.3.1.FACS.Vantage | Objects providing parameters for the raw FCS file types |
| fcs.type.cellquest.3.1.FACScan | Objects providing parameters for the raw FCS file types |
| fcs.type.cellquest.3.3 | Objects providing parameters for the raw FCS file types |
| fcs.type.default | Objects providing parameters for the raw FCS file types |
| fcs.type.DiVa1024 | Objects providing parameters for the raw FCS file types |
| fcs.type.FACSCalibur1024 | Objects providing parameters for the raw FCS file types |
| fcs.type.facscan1024 | Objects providing parameters for the raw FCS file types |
| fcs.type.facscan256 | Objects providing parameters for the raw FCS file types |
| fcs.type.FACStar256 | Objects providing parameters for the raw FCS file types |
| fcs.type.LSR1024 | Objects providing parameters for the raw FCS file types |
| fcs.type.LSR256 | Objects providing parameters for the raw FCS file types |
| fcs.type.LYSYS | Objects providing parameters for the raw FCS file types |
| FCSgate | Class "FCSgate" Flow Cytometry Standard extension to gating |
| FCSgate-class | Class "FCSgate" Flow Cytometry Standard extension to gating |
| FCSggobi | Class "FCSggobi" : Dynamic Plots |
| FCSggobi-class | Class "FCSggobi" : Dynamic Plots |
| FCSmetadata | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| FCSmetadata-class | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| FCSsummary | Class "FCSsummary" Summary object for a "FCS-class" |
| FCSsummary-class | Class "FCSsummary" Summary object for a "FCS-class" |
| FHCRC.HVTNFCS | Fred Hutchinson Cancer Research Center Sequential Gating Procedure |
| fixvars | Checks and fixes the ranges, dimensions, and names of the metadata |
| fixvars-method | Class "FCS" : Flow Cytometry Standard |
| fixvars-methods | Checks and fixes the ranges, dimensions, and names of the metadata |
| fluors | Obtaining the Data of Fluorescence Measurements from a FCS object |
| fluors-method | Class "FCS" : Flow Cytometry Standard |
| fluors-methods | Obtaining the Data of Fluorescence Measurements from a FCS object |
| gate.IPC | Interactive gating of an Image Parallel Coordinates Plot |
| get.h | Estimate the critical bandwidth for specific number of modes |
| get.num.modes | Number of modes of a gaussian kernel |
| get.p | Test if the kernel density estimate given by x and h0 has at most m |
| ggobi | Dynamic Plotting and Viewing the "FCS" object data high-dimensionally |
| ggobi-method | Class "FCS" : Flow Cytometry Standard |
| ggobi-methods | Dynamic Plotting and Viewing the "FCS" object data high-dimensionally |
| ggobi3.FCS | Dynamic Plotting and Viewing the "FCS" object data high-dimensionally |
| icreateGate | Gating of a FCS object: Making a Gating/Selection index column for |
| ImageParCoord | Image Parallel Coordinates Plot: Joint and marginal |
| JointImageParCoord | Image Parallel Coordinates Plot: Joint and marginal |
| KS | Kolmogorov Smirnoff Test 2-sample |
| KS.flowcytest | Kolmogorov Smirnoff Test 2-sample |
| legend.CSP | Makes a rough legend for the ContourScatterPlot |
| length-method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| make.density | Make a matrix of values allocated in a two dimensional grid |
| make.grid | Make a matrix of values allocated in a two dimensional grid |
| metaData | Extraction of the FCSmetadata-class object from a FCS-class object |
| metaData-method | Class "FCS" : Flow Cytometry Standard |
| metaData-methods | Extraction of the FCSmetadata-class object from a FCS-class object |
| MODE | Estimate the highest mode of a multimodale distribution |
| pairs.CSP | Contour/Hexbin Scatterplot Matrices |
| parallelCoordinates | Parallel coordinates: Plotting each observation across all variables |
| pData-method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| percentile.FCS | Calculate the Percent Positive given a percentile |
| PercentPos.FCS | Calculate the Percent Positive given a percentile |
| phenoData-method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| phenoData<--method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| pkci2 | Testing the difference of upper-tail distributions of two samples |
| pkci2.flowcytest | Testing the difference of upper-tail distributions of two samples |
| plot-method | Class "FCS" : Flow Cytometry Standard |
| plot-method | Graphical representation of an object |
| plot-methods | Graphical representation of an object |
| plot.ProbBin.FCS | Plots a ProbBin.FCS object |
| plot2sets.FCS | Create a scatterplot to summaryze and compare two series of FCS objects |
| plotdensity.FCS | Create density plots one parameter of one (or more) FCS object(s) |
| plotECDF.FCS | Create a empirical cumulative distribution plot for one (or more) |
| plotQA.FCS | Create a scatterplot summaryzing one (or two) parameter(s) for several |
| plotvar.FCS | Making Univariate/Bivariate plots of the column variables of a FCS |
| print-method | Class "FCS" : Flow Cytometry Standard |
| print-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| print-method | Class "FCSsummary" Summary object for a "FCS-class" |
| print-method | Printing an object |
| print-methods | Printing an object |
| print-methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| print-methods-method | Class "FCSsummary" Summary object for a "FCS-class" |
| ProbBin.by.control | Test the equivalence of two univariate sample distributions by using |
| ProbBin.combined | Test the equivalence of two univariate sample distributions by using |
| ProbBin.FCS | ProbBin.FCS R-object: Probability binning of 2 samples |
| ProbBin.flowcytest | Test the equivalence of two univariate sample distributions by using |
| read.FCS | Reading in a raw binary Flow Cytometry Standard (FCS) file |
| read.series.FCS | Reading a serie of raw binary Flow Cytometry Standard (FCS) files |
| rect.box.idx | Superimposes a rectangle on an existing plot given positional indicies |
| rflowcyt-defunct | Defunct Functions in rflowcyt package |
| ROC.FCS | ROC (Receiver Operating Characteristic) Curve: Percentage Positives for |
| runflowcytests | Tests the equivalence of two univariate sample distributions by using |
| show-method | Class "FCS" : Flow Cytometry Standard |
| show-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| show-method | Class "FCSsummary" Summary object for a "FCS-class" |
| show-method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| show-method | Showing an object |
| show-methods | Showing an object |
| show-methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| show-methods-method | Class "FCSsummary" Summary object for a "FCS-class" |
| showgate.FCS | Showing the gate and the datapoints within the gate on a prevous plot |
| standard | Estimate the critical bandwidth for specific number of modes |
| summary,"ANY-method" | Summary of object |
| summary-method | Class "FCS" : Flow Cytometry Standard |
| summary-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| summary-methods | Summary of object |
| summary-methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| summary.ProbBin.FCS | Chi-Squared/Standard Normal Approximation Summary Statistics for a |
| VRC.HVTNFCS | Sequential Gating Scheme from Vaccine Research Center (VRC), NIH, |
| WLR | Weighted Logrank Test for testing the differences between |
| WLR.flowcytest | Weighted Logrank Test for testing the differences between |
| xgobi.FCS | XGobi: Dynamic Graphics for Data Analysis on FCS R objects |
| [-method | Class "FCS" : Flow Cytometry Standard |
| [-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| [-method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| [-method | Extraction of slot information using "[" |
| [-methods | Extraction of slot information using "[" |
| [-methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| [<--method | Class "FCS" : Flow Cytometry Standard |
| [<--method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| [<--method | Extraction of slot information using "[" |
| [<--method | Replacement and/or Addition of new slot or indexed elements using "[<-" |
| [<--methods | Replacement and/or Addition of new slot or indexed elements using "[<-" |
| [<--methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| [[-method | Class "FCS" : Flow Cytometry Standard |
| [[-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| [[-method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| [[-method | Extraction of slot information using "[[" |
| [[-methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| [[<-,FCS, ANY, ANY | Class "FCS" : Flow Cytometry Standard |
| [[<--method | Class "FCS" : Flow Cytometry Standard |
| [[<--method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |
| [[<--method | 'cytoSet': a class for storing raw data from a quantitative cell-based |
| [[<--method | Extraction of slot information using "[[" |
| [[<--method | Replacement and/or Addition of new slot or indexed elements using |
| [[<--methods | Replacement and/or Addition of new slot or indexed elements using |
| [[<--methods-method | Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard |