Package: pint
Type: Package
Title: Pairwise INTegration of functional genomics data
Version: 1.2.0
Date: 2010-06-17
Author: Olli-Pekka Huovilainen <ohuovila@gmail.com> and Leo Lahti
        <leo.lahti@iki.fi>
Maintainer: Olli-Pekka Huovilainen <ohuovila@gmail.com>
Description: Pairwise data integration for functional genomics. In
        particular, tools to screen functionally active chromosomal
        aberrations from paired copy number, gene expression and miRNA
        measurements from the same patients.
License: FreeBSD
Collate: AllClasses.R AllGenerics.R DependencyModel-accessors.R
        ChromosomeArmModels-accessors.R ChromosomeModels-accessors.R
        GenomeModels-accessors.R show-methods.R plot-methods.R
        screen.cgh.mrna.R screen.cgh.mir.R calculate.genome.R
        calculate.chr.R calculate.arm.R pick.chr.arm.R fixed.window.R
        iterative.window.R z.effects.R W.effects.R z.expectation.R
        fit.dependency.model.R fit.cgh.mrna.byname.R
        fit.cgh.mir.byname.R centerData.R dependency.score.R
        calc.pcca.R solve.w.R calc.pfa.R initialize2.R
        calc.pcca.with.isotropic.margins.R W.cca.EM.R set.M.isotropic.R
        update.phi.isotropic.R set.M.full.R set.beta.fullcov.R
        calc.ppca.R ppca.calculate.R matrix.sqrt.R
        simCCA.optimize.fullcov.EM.R optimize.fullcov.R update.phi.EM.R
        cost5.R simCCA.optimize.R optimize.W.R set.M.R set.beta.R
        get.W.R update.phi.R cost.W.R update.phi.EM.simcca.R
        optimize.simCCA.W.R sparse.window.R calculate.arm.sparse.R
        calculate.chr.sparse.R calculate.genome.sparse.R pint.data.R
        pint.match.R firstlib.R
LazyLoad: yes
Depends: mvtnorm, methods, graphics, Matrix
biocViews: aCGH, GeneExpression, Genetics, DifferentialExpression,
        Microarray
Packaged: 2010-10-18 11:32:28 UTC; biocbuild2
Built: R 2.12.0; ; 2010-10-18 16:05:17 UTC; windows
