OntologyParser-class    Class "OntologyParser"
OntologyTerm-class      Class "OntologyTerm"
getAccession            Returns accession of the ontology term
getAllTermChildren      Returns all term's children
getAllTermIds           Returns accessions of all ontology terms
getAllTermParents       Returns all term's parents
getAllTerms             Returns all ontology terms
getDefinitions          Returns set of ontology term's definitions
getEFOBranchRootIds     Returns all term's parents
getEFOParser            Returns an instance of the EFO ontology parser
getLabel                Returns label of the ontology term
getOntologyAccession    Returns ontology accession
getOntologyDescription
                        Returns ontology description
getOntologyParser       Returns an instance of the ontology parser
                        created from OWL or OBO file
getRootIds              Returns root terms of ontology
getRoots                Returns root terms of ontology
getSynonyms             Returns set of ontology term's synonyms
getTermAndAllChildrenIds
                        Returns accessions of all term's parents and
                        term itself
getTermById             Returns ontology term
getTermChildren         Returns direct children of term of interest
getTermNameById         Returns ontology term's label
getTermParents          Returns set of direct parents of the term of
                        interest
getTreeDownTo           Returns all term's parents
hasTerm                 Returns true if term is in ontology
isEFOBranchRoot         Returns true if term is the branch root in EFO
isRoot                  Returns true if term is the root in the
                        ontology hierarchy
ontoCAR-package         The ontoCAT package provides a simple interface
                        to the Experimental
searchTerm              Searches term by its name in ontology
searchTermPrefix        Searches for term by prefix in ontology
