GOstructure             Class "GOstructure" (Deprecated)
annotation.vandeVijver
                        Some selected annotations for the breast cancer
                        data from Rosetta
checkerboard            Checkerboard plot for Global Test (Deprecated)
comparative             Comparative proportions for the Global Test
covariates              Global Test diagnostic plots
focusLevel              Multiple testing correction for the Global Test
geneplot                Gene Plot for Global Test (Deprecated)
globaltest              Global Test (Deprecated)
gt                      Global Test (new implementation, 2009)
gt.barplot-class        Class "gt.barplot" for results of the functions
                        geneplot and sampleplot
gt.multtest             Correct globaltest results for multiple testing
                        (Deprecated)
gt.options              Options for globaltest package
gt.result-class         Class "gt.result" for results of the function
                        globaltest (Deprecated)
gtGO                    Gene set testing of gene set databases using
                        Global Test
makeGOstructure         Multiple testing on the GO graph (Deprecated)
mlogit                  Multinomial Logistic Regression
p.value                 Class "gt.object" for storing the result of the
                        function gt
permutations            Permutations version of the Global Test
                        (Deprecated)
regressionplot          Regression Plot for Global Test (Deprecated)
sampleplot              Sample Plot for Global Test (Deprecated)
sampling                Sampling random 'pathways' for the Global Test
vandeVijver             A subset of the Breast cancer data from Rosetta
                        Inpharmatics LLC and
