baySeq-classes          baySeq - classes
baySeq-package          Empirical Bayesian analysis of patterns of
                        differential expression in
factCount               Simulated data for testing the baySeq package
                        methods; simulated counts
factlibsizes            Simulated data for testing the baySeq package
                        methods; simulated
getLikelihoods          Finds posterior likelihoods for each count as
                        belonging to some
getPosteriors           An internal function in the baySeq package for
                        calculating posterior
getPriors               Estimates prior parameters for the underlying
                        distributions of 'count'
getTPs                  Gets the number of true positives in the top n
                        counts selected by
libsizes                Simulated data for testing the baySeq package
                        methods; simulated
plotMA.CD               'MA'-plot for count data.
plotPosteriors          Plots the posterior likelihoods estimated for a
                        'countData' object
plotPriors              Plots the density of the log values estimated
                        for the mean rate in the
simCount                Simulated data for testing the baySeq package
                        methods; simulated counts
simSeg                  Simulated data for testing the baySeq package
                        methods; simulated counts
topCounts               Get the top counts corresponding to some group
                        from a 'countData'
