anovaint                One-factorial ANOVA assessing
                        intensity-dependent bias
anovapin                One-factorial ANOVA assessing pin-dependent
                        bias.
anovaplate              One-factorial ANOVA assessing pin-dependent
                        bias.
anovaspatial            One-factorial ANOVA assessing spatial bias
backgroundCorrect2      Background correction
bas                     Between-array scaling
colorbar.mxy            Generates a colour bar
colorbar.mxy.abs        Generates a colour bar
colorbar.sig            Generates a colour bar for spatial significance
                        plots
fdr.int                 Assessment of the significance of
                        intensity-dependent bias
fdr.int2                Assessment of the significance of
                        intensity-dependent bias
fdr.spatial             Assessment of the significance of spatial bias
fdr.spatial2            Assessment of the significance of spatial bias
fgbg.visu               Visualisation of foreground and background
                        fluorescence spot
ino                     Intensity-dependent normalisation of two-colour
                        microarrays
lin                     Local intensity-dependent normalisation of
                        two-colour microarrays
m2v                     Converts matrix to vector based on spot layout
ma.matrix               Calculation of moving average for a matrix
ma.vector               Calculation of moving average for a vector
mxy.abs.plot            Generation of MXY plots of absolute values
mxy.plot                Generation of MXY plots
mxy2.plot               Generation of MXY plots based on spot
                        coordinates
oin                     Optimised intensity-dependent normalisation of
                        two-colour microarrays
olin                    Optimised local intensity-dependent
                        normalisation of two-colour
p.int                   Calculates significance of intensity-dependent
                        bias
p.int2                  Calculates significance of intensity-dependent
                        bias
p.spatial               Assessment of the significance of spatial bias
                        based on p-values
p.spatial2              Assessment of the significance of spatial bias
                        based on p-values
sig.mask                Masking of data based on significance testing
sigint.plot             Visualisation of significance of
                        intensity-dependent bias
sigint.plot2            Visualisation of significance of
                        intensity-dependent bias
sigxy.plot              Visualisation of significance tests for spatial
                        bias
sigxy.plot2             Visualisation of significance tests for spatial
                        bias
sw                      cDNA microarray data of SW480/SW620 experiment
sw.olin                 Normalised cDNA microarray data of SW480/SW620
                        experiment
sw.xy                   Spatial coordinates of spot locations of
                        SW480/SW620 experiment
v2m                     Converts vector to matrix based on spot layout
