Predict gene network using an Ordinary Differential Equation (ODE) based method

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Documentation for package ‘NTW’ version 1.0.0

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NTW-package Gene interaction network and perturbation targets predictions
A.estimation.Srow Estimation of a single row in matrix A with the perturbation targets
AP.estimation.Srow Estimation of a single row in gene interaction matrix A and
backward Approaches to use a priori known gene association information for a
comb.matrix Create all combinations of vectors
forward Approaches to use a priori known gene association information for a
method.geo Regression methods to estimate a single row in A with fixed
method.ml Regression methods to estimate a single row in A with fixed
method.sse Regression methods to estimate a single row in A with fixed
NTW Estimation of gene interaction matrix A and perturbation targets matrix
P.preestimation Pre-estimation of the transcriptional pertubation targets matrix P
sos.data SOS pathway perturbation data