Ley                     Gene Expression Data from Mouse Immune response
                        study, (2002)
am.trans                Transform replicated arrays into (A,M) format
baseOlig.error          Evaluates LPE variance function of M for
                        quantiles of A within and
baseOlig.error.step1    Evaluates LPE variance function of M for
                        quantiles of A within and
baseOlig.error.step2    Evaluates LPE variance function of M for
                        quantiles of A within and
fdr.adjust              FDR adjustment procedures
fixbounds.predict.smooth.spline
                        Makes the predicted variance non negative
iqr                     Inter-quartile range
lowess.normalize        lowess normalization of the data (based on M vs
                        A graph)
lpe                     Evaluates local pooled error significance test
mt.rawp2adjp.LPE        Adjusted p-values for simple multiple testing
                        procedures
n.genes.adaptive.int    Calcuates the number of genes in various
                        intervals adaptively.
permute                 Calculating all possible permutations of a
                        vector
preprocess              Preprocessing the data (IQR normalization,
                        thresholding, log-
quan.norm               Finding quartile range
quartile.normalize      Normalization based on quartile range
resamp.adj              Resampling based fdr adjustment
